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2021-03-10Pipelines: Fix issue that allowed failing jobs to pass (#22199)Scott Wittenburg1-1/+3
This is a workaround for an issue with how "spack install" is invoked from within "spack ci rebuild". The fact that we don't get an exception or even the actual returncode when using the object returned by spack.util.executable.which('spack') to install the target spec means we get no indication of failures about the install command itself. Instead we rely on the subsequent buildcache creation failure to fail the job.
2021-03-10meson: apply rpath patch for current versions (#22216)Michael Kuhn1-1/+1
meson now only selectively strips rpaths but can still strip required ones (like glib's pcre dependency).
2021-03-10vigra: add master branch (#22037)darmac1-0/+2
2021-03-10fix setup-env.sh on older linux zsh (#21721)Danny McClanahan2-2/+2
2021-03-10haveged: new package at v1.9.13 (#22127)darmac1-0/+15
2021-03-10gdk-pixbuf: add v2.42.2 (#22215)Michael Kuhn1-0/+2
2021-03-10gcc: fix nvptx conflict (#22214)Michael Kuhn1-1/+1
In the past, we only had the binutils variant, which included the bootstrapping flag. Now that we have a separate bootstrap variant, fix the nvptx conflict accordingly.
2021-03-10mii: add v1.0.4 (#21754)darmac1-3/+2
mii: 1.0.3 and 1.0.2 is deprecated, and v1.0.4 can replace them safely
2021-03-10gearshifft: add v0.4.0, remove v0.2.1-lw (#21437)h-denpo2-2/+26
Changed maintainer Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-03-10gnutls: add v3.6.15 (#22192)Andrew W Elble1-0/+1
2021-03-10salmon: add v1.4.0 (#22201)Andrew W Elble3-5/+71
devendored (most) dependencies, added missing dependencies. added resources and bypassed external fetching.
2021-03-10compadre: add new package (#22119)Paul Kuberry1-0/+58
2021-03-10pocl: updated llvm dependency to require not having flang (#22190)h-denpo1-1/+1
depends_on("llvm +clang +shared_libs -flang @6.0:11.0", when="@1.6")
2021-03-10lxc: fix install error (#22206)Tomoyasu Nojiri1-0/+6
2021-03-10rsyslog: fix install error (#22207)Tomoyasu Nojiri1-0/+5
2021-03-10satsuma2: fix install error (#22208)Tomoyasu Nojiri1-1/+1
2021-03-10warpx: add libs attribute to fix build on aarch64 (#22072)Tomoyasu Nojiri1-0/+10
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-03-10BLAS++: OpenMP for AppleClang (#22211)Axel Huebl1-0/+1
We need to install OpenMP for Apple's Clang.
2021-03-10abinit: updated patch for Fujitsu compilers (#22009)m-shunji2-38/+52
2021-03-09netcdf-c@4.7.3:4.7.4 patch detection of pnetcdf for spectrum-mpi (#22180)eugeneswalker2-0/+47
2021-03-09Bump version libnetworkit/networkit 8.0 -> 8.1 (#22194)Fabian Brandt2-0/+3
Co-authored-by: FBT <fabian.brandt-tumescheit@hu-berlin.de>
2021-03-09nalu-wind: add cuda variant (#22184)eugeneswalker1-80/+72
2021-03-09ReFrame 3.5.0 recipe (#22196)Vasileios Karakasis1-0/+1
2021-03-09Add pthread variant to kokkos-kernels (#22120)Paul Kuberry1-0/+1
2021-03-09Pacifica spack integration work (#20485)Evan Felix5-0/+95
* Add intel cluster package update2 for 2020 * add pacifica cli tools, and pager * remove boilerplate code * update flake8 lints * update flake8 lint, missed one * add a description for pager * Shorten a line * Remove whitespace * check on dependencies and move urls to proper place * Remove import package as it seems it is not required * add requests to the uploader config * remove blank Line * change to build and run for packages * add run and build to the packages * move from url method to pypi method * adjust requirements based on feedback from adamjstewart * remove python 3 requirement, and add setuptools-scm * remove dependence on python Co-authored-by: Evan Felix <evan.felix@pnnl.gov>
2021-03-09kicad: add v5.1.9 (#22123)Andrew W Elble2-4/+12
ngspice to v34
2021-03-09iptraf-ng: new package at v1.2.1 (#22155)darmac1-0/+22
2021-03-09hw-probe: new package at v1.5 (#22156)darmac1-0/+20
2021-03-09ike-scan: new package at v1.9 (#22160)darmac1-0/+15
2021-03-09libmacaroons: new package at v0.3.0 (#22142)darmac1-0/+26
2021-03-08scr: require dtcmp, switch from /tmp to /dev/shm (#22073)Adam Moody1-4/+16
2021-03-08DSQSS: Add test function, and Continuation of # 21666. (#22103)a-saitoh-fj2-0/+55
2021-03-08Fix `spack graph` when deptypes are filtered (#22121)Harmen Stoppels6-8/+84
2021-03-08Add `--vanilla` flag to r build system (#22166)Glenn Johnson1-0/+1
Unlike the other commands of the `R CMD` interface, the `INSTALL` command will read `Renviron` files. This can potentially break builds of r- packages, depending on what is set in the `Renviron` file. This PR adds the `--vanilla` flag to ensure that neither `Rprofile` nor `Renviron` files are read during Spack builds of r- packages.
2021-03-08casacore: add v3.4.0 (#22163)Martin Pokorny1-0/+1
2021-03-08Update Cmake 3.19.x to support crayftn preprocessing (cce 11+) (#22122)James Elliott2-0/+38
Cray added necessary functionality for CMake to support fortran preprocessing using crayftn. This patch is necessary for the current release of cmake (3.19), with this patched expected to be in the 3.20 release of Cmake. The included patch is from kitware. see https://gitlab.kitware.com/cmake/cmake/-/merge_requests/5882 Co-authored-by: James Elliott <jjellio@sandia.govv>
2021-03-08v0.9.1 release of mochi-margo (#22164)Phil Carns2-3/+5
2021-03-08Add latest versions for lcio and sio (#22173)Thomas Madlener2-1/+3
2021-03-08Tuning variant for Kokkos packages (#22176)David Poliakoff1-0/+2
2021-03-08py-tensorflow-probability: run install from correct working dir (#22175)Andrew W Elble1-3/+6
2021-03-08suite-sparse: add v5.9.0 (#22168)Kai Torben Ohlhus1-0/+1
Update homepage URL and see release notes: - https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.9.0
2021-03-08kmod: add --with-bashcompletiondir option (#22167)Tomoyasu Nojiri1-0/+6
2021-03-08catch2: add v2.13.4 (#22170)Axel Huebl1-1/+2
Add the latest release of Catch2.
2021-03-08bpp-seq: add v2.4.1 (#22171)Tomoyasu Nojiri1-0/+1
2021-03-08bpp-core: add v2.4.1 (#22172)Tomoyasu Nojiri1-0/+1
2021-03-08py-tensorflow-probability: new package (#22165)Andrew W Elble3-0/+141
* py-tensorflow-probability: new package * setuptools dep, quoting syntax
2021-03-07spack python: add --path option (#22006)Todd Gamblin3-1/+14
This adds a `--path` option to `spack python` that shows the `python` interpreter that Spack is using. e.g.: ```console $ spack python --path /Users/gamblin2/src/spack/var/spack/environments/default/.spack-env/view/bin/python ``` This is useful for debugging, and we can ask users to run it to understand what python Spack is picking up via preferences in `bin/spack` and via the `SPACK_PYTHON` environment variable introduced in #21222.
2021-03-07add `spack test list --all` (#22032)Todd Gamblin3-6/+39
`spack test list` will show you which *installed* packages can be tested but it won't show you which packages have tests. - [x] add `spack test list --all` to show which packages have test methods - [x] update `has_test_method()` to handle package instances *and* package classes.
2021-03-06Add new package: r-mockery (#22125)darmac1-0/+25
2021-03-06Add new package: r-lobstr (#22069)darmac1-0/+25
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