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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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If we don't rename Spack will fail with:
```
ImportError: cannot bootstrap the "clingo" Python module from spec "clingo-bootstrap@spack+python %gcc target=x86_64" due to the following failures:
'spack-install' raised ValueError: Invalid config scope: 'bootstrap'. Must be one of odict_keys(['_builtin', 'defaults', 'defaults/cray', 'bootstrap/cray', 'disable_modules', 'overrides-0'])
Please run `spack -d spec zlib` for more verbose error messages
```
in case bootstrapping from binaries fails and we are
falling back to bootstrapping from sources.
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ensure that none of ^intel-mkl, ^intel-mpi, and ^mkl are used, unless
the compiler is intel.
Fix bad logic in the src/src_xs/m_makespectrum.f90 file in the oxygen version.
Add the -fallow-argument-mismatch for gcc >= 10.
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* add exaworks spack meta package
* add maintainer
* switch to `BundlePackage`
* flake8
* another flake8 fix
* remove incorrect dependency
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* scr: 3.0rc2 release, variants and deps updates
This adds 3.0rc2 release for end users to aid in testing scr for
upcoming 3.0 release.
Included in this change:
- Require most recent component versions for this release
- Add a variant for PDSH as it is now an optional dependency with
this release
- Add bbapi and datawarp (dw) variants
- bbapi_fallback variant now requires bbapi variant with latest
release
- Add variants to enable/disable examples and tests
- Add shared variant and current conflicts with ~shared
- Update cmake_args to account for added variants where needed
Additional updates:
- Add maintainers
- Use lists and for loops to clean up repetitive code involving all
components
- Use self.define and self.define_from_variant to clean up cmake_args
- Use consistent quoting throughout package
* Un-deprecate v2 and legacy
* Use new conditional variants
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Define new variants asdf, hdf5, rnpl, silo to allow disabling or
enabling dependencies.
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The Makefile expects the "other" libtool, not the GNU libtool we have in Spack.
Closes https://github.com/spack/spack/issues/26993
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
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Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
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* trilinos: fix @13.0.1+tpetra^cuda@11
* Mark CUDA conflict with old versions and always define TPL
* trilinos: patch doesn't build so just mark as conflict
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Update `warpx` & `py-warpx` to the latest release, `21.11`.
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Version 2.5.4 adds an option which allows Nemsio to be built without MPI
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A common question from users has been how to model variants
that are new in new versions of a package, or variants that are
dependent on other variants. Our stock answer so far has been
an unsatisfying combination of "just have it do nothing in the old
version" and "tell Spack it conflicts".
This PR enables conditional variants, on any spec condition. The
syntax is straightforward, and matches that of previous features.
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* GnuPG: allow bootstrapping from buildcache and sources
* Add a test to bootstrap GnuPG from binaries
* Disable bootstrapping in tests
* Add e2e test to bootstrap GnuPG from sources on Ubuntu
* Add e2e test to bootstrap GnuPG on macOS
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* Update spack load docs
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Bumps [actions/checkout](https://github.com/actions/checkout) from 2.3.5 to 2.4.0.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/1e204e9a9253d643386038d443f96446fa156a97...ec3a7ce113134d7a93b817d10a8272cb61118579)
---
updated-dependencies:
- dependency-name: actions/checkout
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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* Add build editions for catalyst builds.
* Fix style.
* Build edition works only for 5.8:
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* trilinos: add @13.2.0, and switch default to cxxstd=14
* trilinos: fix python dependency when using +ifpack or +ifpack2
* trilinos: add conflict for ~epetra +ml when @13.2.0:
* trilinos: keep 13.0.1 as the preferred version
* Update var/spack/repos/builtin/packages/trilinos/package.py
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
* update
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
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This PR adds error message sentinels to the clingo solve, attached to each of the rules that could fail a solve. The unsat core is then restricted to these messages, which makes the minimization problem tractable. Errors that can only be generated by a bug in the logic program or generating code are prefaced with "Internal error" to make clear to users that something has gone wrong on the Spack side of things.
* minimize unsat cores manually
* only errors messages are choices/assumptions for performance
* pre-check for unreachable nodes
* update tests for new error message
* make clingo concretization errors show up in cdash reports fully
* clingo: make import of clingo.ast parsing routines robust to clingo version
Older `clingo` has `parse_string`; newer `clingo` has `parse_files`. Make the
code work wtih both.
* make AST access functions backward-compatible with clingo 5.4.0
Clingo AST API has changed since 5.4.0; make some functions to help us
handle both versions of the AST.
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
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* New versions of py-jupyter-server; fix tests
* Update package.py
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This removes `-lpytrilinos` from Makefile.export.Trilinos so that C code
trying to link against a Trilinos built with PyTrilinos does not fail
due to undefined references to python routines (libpytrilinos is only
used when importing PyTrilinos in python, in which case those references
are already defined by Python).
There was already a bit of code to do something similar for C codes
importing Trilinos via a CMake mechanism, this extends that to a basic
Makefile mechanism as well. This patch also updates the comments to
remove a stale link discussing this issue, and replacing with links to
the some Trilinos issue reports related to the matter.
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