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2018-11-13Fix bugs in Modules Tutorial (#9821)Adam J. Stewart1-3/+3
Found a couple bugs while trying to copy and paste the exact tutorial content.
2018-11-13New package: openimageio (#9715)Phil Tooley1-0/+48
2018-11-13New package: dcmtk (#9716)Phil Tooley1-0/+57
2018-11-13Fix pkg-config dependencies (#9738)Michael Kuhn4-4/+4
Replace dependencies on specific pkgconfig implementation (e.g. pkgconf) with dependency on pkgconfig virtual package
2018-11-12gplates package: improvements (#9735)Michael Kuhn1-6/+4
- Add version 2.1.0 - Now that #9264 has been merged, gplates seems to build fine with newer versions of gcc (tested with gcc@8) - When using the ninja generator, gplates can be built in parallel
2018-11-12Add 'pic' variant to netcdf packages (#9605)Alberto Chiusole3-6/+27
2018-11-12TALASS package: replace old version with new version (#9703)Peer-Timo Bremer1-1/+1
New version has bug fixes
2018-11-12libMesh: new version and dependency updates (#9709)Manav Bhatia1-1/+13
* added v1.3.1 checksum * added vtk and petsc variants * bugfix: enable petsc when slepc variant is specified
2018-11-12Open MPI: add versions 3.1.3, 3.0.3, update checksums (#9734)Daniel Topa1-18/+21
All checksums are now sha256
2018-11-12pkgconf: Add 1.5.4 (#9737)Michael Kuhn1-0/+1
2018-11-12chrpath: add new package (#9708)Matthias Diener1-0/+16
2018-11-12version/dependency updates for ilmbase and openexr (#9714)Phil Tooley2-16/+35
* include zlib dependency for openexr, fixes #7274 * version bump to openexr/ilmbase 2.3.0
2018-11-12new package: flatcc (#9695)Cameron Stanavige1-0/+46
2018-11-12nlohmann-json: add new version 3.4.0 (#9692)Axel Huebl1-0/+1
2018-11-12py-numba: update dependencies and versions (#9706)Ross Miller2-4/+15
The latest version of py-numba (0.40.1) wants a newer version of py-llvmlite. Had to add that version to py-llvmlite/package.py.
2018-11-12migrate: new package starting at 3.6.11 (#9707)Justin Stanley1-0/+71
2018-11-12new package: PyH5glance (#9700)Sinan1-0/+22
2018-11-12new package: python htmlgen (#9699)Sinan1-0/+24
2018-11-12gnuplot: add X11 dependency and QT terminal (#9722)Denis Davydov1-3/+32
2018-11-12r-manipulatewidget: new package at 0.10.0 (#9826)Justin Stanley1-0/+28
2018-11-12r-webshot: new package at 0.5.1 (#9824)Justin Stanley1-0/+20
2018-11-12r-callr: adding new dependencies (#9730)Levi Baber1-0/+5
2018-11-12r-convevol: new package at 1.3 (#9767)Justin Stanley1-0/+22
2018-11-12r-miniui: new package at 0.1.1.1 (#9823)Justin Stanley1-0/+20
2018-11-12r-clustergeneration: new package at 1.3.4 (#9765)Justin Stanley1-0/+18
2018-11-12Fix typos in Build Systems Tutorial (#9822)Adam J. Stewart1-4/+4
2018-11-12docs: update tutorial slide link for SC18Todd Gamblin1-8/+8
2018-11-12version bump: v0.12.0Todd Gamblin1-1/+1
2018-11-12docs: add environments tutorialTodd Gamblin2-4/+821
- tutorial goes through three sections: - installing and uninstalling environments - dealing with many specs - spack.yaml and spack.lock and workflows
2018-11-11Updates to Configuration Tutorial for SC18 (#9811)Adam J. Stewart1-176/+242
* Updates to Configuration Tutorial for SC18 * Suggested rewording
2018-11-11Consistent capitalization of Build Caches docs for SC18 (#9810)Adam J. Stewart1-1/+1
2018-11-11Minor changes to Build Settings docs (#9808)Adam J. Stewart1-25/+27
2018-11-11Minor changes to Basic Settings docs for SC18 (#9809)Adam J. Stewart2-17/+19
Grammar/spelling issues
2018-11-11Update basic usage and modules tutorial (#9807)Greg Becker3-1148/+1149
* "spack install" now uses cache by default, update examples accordingly * Replace some example packages with others * Packing tutorial reference to "spack env" replaced with "spack build-env" * Command line prompts in examples are shortened * Example output (including paths) are updated to be more relevant to training environment
2018-11-11Advanced packaging tutorial: reorganize for binary caches (#9804)Peter Scheibel1-145/+157
Update all examples that need an MPI provider to build with MPICH; reorganize so that fixing MPICH (as part of environment section) comes first in the tutorial (most examples in the tutorial use an MPI provider).
2018-11-11env: uninstall just removes specs that are still needed by other envsTodd Gamblin1-51/+107
- previously, uninstall would complain if a spec was needed by an environment. - Now, we analyze dependents and dependent environments and simply remove (not uninstall) specs that are needed by environments
2018-11-11bugfix: preserve abstract specs when installing an environmentTodd Gamblin2-9/+9
- `spack install` was setting the root to be the concrete spec - abstract spec is now preserved
2018-11-11env: fix display of concretized specs in `spack find`Todd Gamblin1-5/+3
- fix highlighting of roots in concretized specs in `spack find` - tighten up the `spack find` output in environments
2018-11-11env: make `spack config edit` and `spack config get` environment-awareTodd Gamblin5-27/+183
- with no arguments, these commands will now edit or dump the environment's `spack.yaml` file. - users may not know where named environments live - this makes it convenient for users to get to the spack.yaml configuration file for their named environment.
2018-11-11bugfix: make defaults consistent --use-cache and --no-cache (#9803)Todd Gamblin1-3/+3
2018-11-11Update buildsystem tut (#9795)Mario Melara2-45/+54
* Update Makefile to use property methods ("build_targets"/"install_targets") to demonstrate their usage * Fix highlighting * Change cbench example to ESMF: CBench package file was changed and no longer uses the example shown in the old docs
2018-11-11Updates to Configuration Files docs for SC18 (#9801)Adam J. Stewart2-139/+138
Scopes added with -C are now referred to as "custom scopes" rather than "command line scopes". "command line scope" now refers to specific config options that are set on the command line (like "--insecure")
2018-11-09install: add --use-cache back so that existing tooling does not break (#9797)Todd Gamblin1-2/+8
- default is still to use the cache, but we've added back the `--use-cache` argument so that scripts that used it are still correct. - `--no-cache` is stil present and is mutually exclusive with `--use-cache`
2018-11-09Update Dyninst package file for TBB dependency (#9728)Jim Galarowicz5-7/+12
* Update Dyninst package file for TBB dependency Dyninst master and 10.0 release versions require the tbb package. This mod updates the tbb versions adding the one that dyninst uses and adds the required spack package changes to dyninst/package.py. * Put new version of tbb in proper location, per reviewer comment. * Only depend on tbb if building the development version. * Changes for the release of Dyninst 10.0.0
2018-11-09travis: allow Python 2.6 to fail until we figure out why Travis hangs (#9776)Todd Gamblin1-0/+2
2018-11-09Introduce fftw-api virtual package for Intel-MKL and FFTW (#9618)Nichols A. Romero4-2/+10
* Introduce FFTW2 and FFT3 providers for Intel-MKL and FFTW Spack packages. * make fftw default package for fftw-api virtual package * virtual package test assertion now provides location of default virtual packages. * Change name of virtual package to fftw-api and used versioned interface.
2018-11-09buildcache: update `spack install` to use build cache by default (#9772)Greg Becker4-7/+11
2018-11-09env: clean up command access to the active environmentTodd Gamblin5-40/+51
- all commands (except `spack find`, through `ConstraintAction`) now go through get_env() to get the active environment - ev.active was hard to read -- and the name wasn't descriptive. - rename it to _active_environment to be more descriptive and to strongly indicate that spack.environment manages it
2018-11-09env: only add `concrete` attribute to abstract specsTodd Gamblin1-3/+4
- to aovid changing spec hashes drastically, only add this attribute to differentiated abstract specs. - othherwise assume that read-in specs are concrete
2018-11-09env: make environment search more consistent; simplify codeTodd Gamblin4-105/+105
- spack.yaml files in the current directory were picked up inconsistently -- make this a sure thing by moving that logic into find_environment() and moving find_environment() to main() - simplify arguments to Spack command: - remove short args for infrequently used commands (--pdb/-D, -P, -s) - `spack -D` now forces an env with a directory