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2017-05-06Updating bamtools to include a dependency for zlib. (#4031)Barry Britt1-8/+9
* Updating bamtools to include a dependency for zlib. In a standard compile, bamtools will fail if zlib headers are not installed on the target machine. In order to maintain compatibility with all systems -- and since zlib is included already as a dependency for cmake -- this patch adds zlib as a link dependency for the bamtools package. * Modified cmake rpath include. Bamtools has a non-standard library location, so we need to append $prefix/lib/bamtools to the rpath. Not sure there's a better way to do this... * Fixing syntax error in package.py Fixed a non-terminated parenthesis on line 46. * Updated bamtools to be a CMakePackage Removed extraneous code, and altered the package to extend cmake_args including the non-standard library location. * UpRemoving cmake dependency and removing blank line from end of file * Updates to cmake_args. Removed the duplicate definition of std_cmake_args in favor of simply overriding the CMAKE_INSTALL_RPATH variable that is provided. This should allow the package to be linked correctly to itself.
2017-05-06Update zlib to work with other compilers (#4088)Matthew Scott Krafczyk2-0/+15
* Fix -include issue with intel and pgi in zlib MERGE CANDIDATE * Patch zlib to compiler with the cray compiler suite.
2017-05-05Remind developers to update tab completion script (#4148)Adam J. Stewart1-0/+4
2017-05-05Add info for perl@5.22.1 (#4147)George Hartzell1-0/+1
What the user wants, the user gets....
2017-05-05Add latest version of curl (#4140)Adam J. Stewart1-1/+2
2017-05-05Python 3 doesn't have iteritems, use items (#4143)Adam J. Stewart3-5/+5
2017-05-05Add latest version of Lmod (#4141)Adam J. Stewart1-1/+2
2017-05-05Fix typos in Basic Installation Tutorial (#4127)Adam J. Stewart1-4/+4
2017-05-05Add info for jdk@8u73 (#4137)George Hartzell1-3/+6
* Fix ordering of versions (proper!) * Add url/digest for jdk@8u73
2017-05-05Add OpenCV 3.2.0 checksum (#4138)Todd Gamblin1-0/+1
2017-05-05Add info for r@3.3.3 (#4128)George Hartzell1-0/+1
2017-05-04SV variants are evaluated correctly in "when=" (#4118)Massimiliano Culpo5-42/+59
* SV variants are evaluated correctly in `when=` statements fixes #4113 The problem here was tricky: ```python spec.satisfies(other) ``` changes already the MV variants in others into SV variants (where necessary) if spec is concrete. If it is not concrete it does nothing because we may be acting at a pure syntactical level. When evaluating a `when=` keyword spec is for sure not concrete as it is in the middle of the concretization process. In this case we have to trigger manually the substitution in other to not end up comparing a MV variant "foo=bar" to a SV variant "foo=bar" and having False in return. Which is wrong. * sv variants: improved error message for typos in "when=" statements
2017-05-04variants: fixed packages reported by @adamjstewart in #4098 (#4105)Massimiliano Culpo5-33/+85
2017-05-04Merge pull request #4121 from davydden/fix_transitive_build_dep_2scheibelp1-3/+3
add transitive run dependencies of direct build dependencies
2017-05-04patch sqlite to work around macro definition (#4117)Gregory Lee2-0/+19
2017-05-04add transitive run dependencies of direct build dependenciesDenis Davydov1-3/+3
2017-05-03Merge pull request #4069 from davydden/fix_transitive_build_depscheibelp1-1/+6
only add direct build-only dependencies to PATH
2017-05-03Update py-beautifulsoup4 (#4089)Matthew Scott Krafczyk1-4/+3
* Update py-beautifulsoup4 * Change beautifulsoup4 url to pypi.io url.
2017-05-03Update cray compiler options (#4086)Matthew Scott Krafczyk1-0/+12
2017-05-03building wget depends on perl > 5.12.0 (#4087)Matthew Scott Krafczyk1-0/+1
* building wget depends on perl > 5.12.0 * Remove extra parenthesis
2017-05-03bash completion: fixed invalid identifier (#4079)Massimiliano Culpo1-1/+4
* bash completion: fixed `_spack_create-db-tarball': not a valid identifier * bash completion: dashes are translated to underscores This also fixes the name of the subfunction to be called, as apparently it was not updated after moving the command `create-db-tarball`.
2017-05-03hdf5: updated version (#4108)Massimiliano Culpo1-0/+1
2017-05-03spack: no stacktrace if not in debug mode + fix emacs variant (#4098)Massimiliano Culpo3-8/+11
* spack: no stacktrace if not in debug mode + fix emacs variant * emacs: removed dead code
2017-05-02Add the py-dryscrape package (#4094)Matthew Scott Krafczyk1-0/+41
* Add the py-dryscrape package * Adjust dependencies and change development to develop
2017-05-02Update the py-lxml package (#4090)Matthew Scott Krafczyk1-0/+4
2017-05-02Add findutils package (#4091)Matthew Scott Krafczyk1-0/+53
2017-05-02Add the py-webkit-server package (#4092)Matthew Scott Krafczyk1-0/+35
* Add the py-webkit-server package * Change development to develop
2017-05-02Add the py-xvfbwrapper package (#4093)Matthew Scott Krafczyk1-0/+37
2017-05-02Add py-pyprof2html package (#4095)Matthew Scott Krafczyk2-0/+49
2017-05-02Add py-libconf package (#4096)Matthew Scott Krafczyk1-0/+36
2017-05-02Add the libconfig package (#4097)Matthew Scott Krafczyk1-0/+43
2017-05-02cgal: updated version (#4081)Massimiliano Culpo1-0/+1
2017-05-02Add link to spack view docs in command index (#4082)Adam J. Stewart1-3/+4
2017-05-02Allow ghostscript to build with Spack dependencies (#4065)Adam J. Stewart1-6/+37
2017-05-02Add missing dependencies to emacs (#4068)Adam J. Stewart1-0/+3
2017-05-02mvapich2: fixed broken reference to spec (#4078)Massimiliano Culpo1-0/+1
2017-05-02add run-time dependencies of direct build-time dependencies to PATHDenis Davydov1-0/+5
2017-05-01Allow user to specify profile sort column on the command line. (#4056)Todd Gamblin2-3/+45
- Add -P <STAT> argument so that caller can specify a sort column for cProfile. Can specify multiple columns with commas. e.g.: spack -P cumtime,module - Add --lines option to Spack spec to control number of profile lines displayed - Sort by time by default (because it works in all Python versions) - Show sort column options in command help. - Do a short profile run in the unit tests.
2017-05-01only add direct build-only dependencies to PATHDenis Davydov1-1/+1
2017-05-01Add latest version of libtiff (#4067)Adam J. Stewart1-1/+2
2017-05-01Multi-valued variants (#2386)Massimiliano Culpo22-438/+1961
Modifications: - added support for multi-valued variants - refactored code related to variants into variant.py - added new generic features to AutotoolsPackage that leverage multi-valued variants - modified openmpi to use new features - added unit tests for the new semantics
2017-05-01Add latest version of lcms (#4066)Adam J. Stewart1-4/+5
2017-05-01Skip fetch tests for tools that are not installed. (#4059)Todd Gamblin4-9/+39
This allows people on systems that don't have all the fetchers to still run Spack tests. Mark tests that require git, subversion, or mercurial to be skipped if they're not installed.
2017-05-01url_parse: ported to pytest (#3430)Massimiliano Culpo1-693/+391
2017-05-01namespace_trie: ported to pytest (#4060)Massimiliano Culpo1-59/+63
2017-05-01Add a WafPackage base class (#3975)Adam J. Stewart9-47/+220
* Add a WafPackage base class * Correct comment in docstring * Be more specific about the Python versions supported
2017-05-01url_substitution: ported to pytest (#4032)Massimiliano Culpo1-54/+34
2017-04-30flecsale: works with python3 (#4058)Christoph Junghans1-1/+1
Ref laristra/flecsale#41
2017-04-30disable rpaths on Darwin when arg=-r mode=ccld (#3930)Denis Davydov1-1/+1
This fixes build of Ipopt package.
2017-04-30Updated cc wrapper: switch from ld to vcheck if version is requested. (#2501)Sergey Kosukhin1-1/+1