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2016-08-19Fix binary conflicts during sphinx activationAdam J. Stewart1-1/+1
2016-08-19Add all Sphinx dependenciesAdam J. Stewart13-40/+275
2016-08-18Merge pull request #1527 from SteVwonder/py-cffi-rpath-fixTom Scogland1-0/+10
py-cffi: set LDSHARED in env so that rpath is set
2016-08-18py-cffi: set LDSHARED env so that rpath is setStephen Herbein1-0/+10
py-cffi's .so was being built without the rpath being set. distutils looks at the LDSHARED for which compiler to use to build the final .so. Since it was not set, distutils fell back to the system provided compiler. Setting it forces the shared library to be compiled with the spack compiler (meaning that the rpath is set correctly).
2016-08-16Merge pull request #1531 from davydden/pkg/apebecker331-0/+55
ape: add new package
2016-08-16Merge pull request #1530 from davydden/pkg/octopusbecker331-0/+86
octopus: new package
2016-08-16ape: add new packageDenis Davydov1-0/+55
2016-08-16octopus: new packageDenis Davydov1-0/+86
2016-08-15Merge pull request #1524 from epfl-scitas/bugfix/urlsTodd Gamblin1-1/+1
stripping the links to remove spaces and '\n'
2016-08-15stripping the links to remove spaces and '\n'Nicolas Richart1-1/+1
2016-08-15Don't assume spack is in the path when buildign docs.Todd Gamblin1-1/+2
2016-08-12Merge pull request #1509 from adamjstewart/docs/md5Todd Gamblin2-7/+19
Update documentation for spack md5
2016-08-12Merge pull request #1342 from adamjstewart/features/cgnsTodd Gamblin1-0/+73
Add CGNS package
2016-08-12Update documentation for spack md5Adam J. Stewart2-7/+19
2016-08-11Merge pull request #1493 from xjrc/bugfix/nonbool-variantsbecker331-4/+3
Bug Fix : Allow Packages to Have Variants w/ Non-Bool, Non-String Defaults
2016-08-11Merge pull request #1484 from mpbelhorn/olcf/correct_cce_compiler_namebecker331-5/+4
Olcf/correct cce compiler name
2016-08-11Corrects Cray compiler name and adds missing version flag.Matt Belhorn1-5/+4
2016-08-11Merge pull request #1480 from adamjstewart/features/run-flake8Todd Gamblin1-21/+30
Various improvements to run-flake8
2016-08-11Always clean up tmp files, even if killedAdam J. Stewart1-10/+14
2016-08-11Allow run-flake8 to be run from anywhereAdam J. Stewart1-5/+3
2016-08-11Run flake8 checks on changed uncommitted filesAdam J. Stewart1-7/+14
2016-08-11Merge pull request #1491 from eschnett/eschnett/curlTodd Gamblin1-0/+1
Update curl to 7.50.1
2016-08-10Merge pull request #1496 from LLNL/features/pep8-compliancebecker33550-3086/+4489
PEP8 compliance
2016-08-10Remove unneeded noqa comments.Todd Gamblin20-60/+109
2016-08-10Update README.md for PEP8Todd Gamblin1-7/+14
2016-08-10Spack packages now PEP8 compliant.Todd Gamblin381-1644/+2484
2016-08-10Move jsonschema files out of `config.py` to their own package.Todd Gamblin8-276/+507
2016-08-10Make Spack core PEP8 compliant.Todd Gamblin150-1163/+1439
2016-08-10Merge pull request #1495 from LLNL/bugfix/module-init-deprecation-gh1494Todd Gamblin1-1/+1
Fix superclass constructor args.
2016-08-10Fix superclass constructor for SpackNamespace objects.Todd Gamblin1-1/+1
2016-08-10Fixed a bug that was making packages with non-bool default variants to crash.Joseph Ciurej1-4/+3
2016-08-10Update curl to 7.50.1Erik Schnetter1-0/+1
2016-08-09Merge pull request #1485 from hartzell/patch-6becker331-1/+1
Fix typo 'flexbile' -> 'flexible'
2016-08-09Fix typo 'flexbile' -> 'flexible'George Hartzell1-1/+1
2016-08-09Merge pull request #1482 from ↵Todd Gamblin1-1/+1
mpbelhorn/olcf/do_not_use_ssl_to_fetch_upstream_openssl Openssl package should not require openssl (https) to obtain source.
2016-08-09Openssl package should not require openssl (https) to obtain source.Matt Belhorn1-1/+1
2016-08-09Merge pull request #1015 from LLNL/features/faster-virtualsTodd Gamblin25-469/+1348
Faster virtuals and concretization
2016-08-09Merge pull request #1473 from epfl-scitas/packages/plumed_dependentsbecker333-29/+83
plumed : added dependents (gromacs, cp2k)
2016-08-09Properly re-raise exceptions from lock context handler.Todd Gamblin1-4/+6
2016-08-09Flake8 fixesTodd Gamblin16-330/+294
2016-08-09qa : flake8 issuesalalazo1-12/+13
2016-08-09Move provider cache to home directory and refactor TransactionsTodd Gamblin18-113/+600
Major stuff: - Created a FileCache for managing user cache files in Spack. Currently just handles virtuals. - Moved virtual cache from the repository to the home directory so that users do not need write access to Spack repositories to use them. - Refactored `Transaction` class in `database.py` -- moved it to `LockTransaction` in `lock.py` and made it reusable by other classes. Other additions: - Added tests for file cache and transactions. - Added a few more tests for database - Fixed bug in DB where writes could happen even if exceptions were raised during a transaction. - `spack uninstall` now attempts to repair the database when it discovers that a prefix doesn't exist but a DB record does.
2016-08-09plumed : fixed name clash on attributealalazo1-2/+2
2016-08-09plumed : adding dependentsMassimiliano Culpo3-18/+71
* cp2k : added plumed * gromacs : patched pme load balancing * gromacs : added plumed
2016-08-08Fix bugs with sparse spec printing.Todd Gamblin3-10/+34
- Make namespace, arch, and dependnecies show up in spec yaml only if they're set. - Lost some of this functionality with deptypes
2016-08-08Restore text output in verbose mode.Todd Gamblin1-0/+4
2016-08-08Make compiler command test last until caching is fixed.Todd Gamblin1-2/+3
- global compiler cache breaks tests that come after this one.
2016-08-08Fix issues with import order in tests.Todd Gamblin1-15/+30
- modules weren't set properly as attributes in parent modules
2016-08-08WIPTodd Gamblin3-27/+117
2016-08-08Fix iterator invalidation issues.Todd Gamblin1-10/+19
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