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2021-04-21New package: r-assertive-datetimes (#23180)Jen Herting1-0/+25
Co-authored-by: Alex Leute <acl2809@rit.edu> Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21Disable multithreaded version of zstd by default (#23167)Harmen Stoppels2-2/+7
* Disable multithreaded version of zstd by default * zstd pthreads by default again! but configurable, and turned off in GCC
2021-04-21New package: r-assertive-numbers (#23181)Jen Herting1-0/+25
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21MAGMA: Add e4s testsuite-inspired smoke test (#23011)Sergei Shudler1-0/+31
2021-04-21lbann: remove deprecated variants in opencv (#23176)Massimiliano Culpo1-4/+5
2021-04-21axl: add version 0.4.0 (#23044)Cameron Stanavige1-16/+24
* Swap .zip downloads with .tar.gz downloads (and update download hashes) * New variants: intel_cppr and bbapi_fallback support
2021-04-21unifyfs: add version 0.9.2 (#22390)Cameron Stanavige2-53/+17
UnifyFS has been integrated with updated versions of its mochi-margo dependency (and mochi-margo's mercury and libfabric dependencies). This removes support for version 0.9.0
2021-04-21Fix GCC with zstd on CCentOS 7 where it doesn't consider the lib64 directory ↵Harmen Stoppels1-1/+4
(#23169)
2021-04-21conduit package: avoid issue with subclass case (#23156)Cyrus Harrison1-3/+7
* avoid issue with subclass case * catch named exception
2021-04-21OpenCV: overhaul package (#22340)Adam J. Stewart1-229/+167
2021-04-21ASP-based solve: minimize compiler mismatches (#23016)Massimiliano Culpo2-32/+26
fixes #22718 Instead of trying to maximize the number of matches (preferred behavior), try to minimize the number of mismatches (unwanted behavior).
2021-04-21ASP-based solver: suppress warnings when constructing facts (#23090)Massimiliano Culpo1-1/+4
fixes #22786 Trying to get optimization flags for a specific target from a compiler may trigger warnings. In the context of constructing facts for the ASP-based solver we don't want to show these warnings to the user, so here we simply ignore them.
2021-04-20lbann: requirements of the new variants for the legacy versions (#23159)Brian Van Essen1-1/+7
Fixed the range of conduit for legacy versions of LBANN.
2021-04-20check for package in spec not variant (#23157)Chris White1-3/+3
2021-04-20Catch rstudio based URL for `cran` attribute in create.py (#23072)Glenn Johnson1-1/+1
2021-04-20Removed unnecessary code to put cuda_arch in DiHydrogen (#23158)Brian Van Essen2-14/+4
These were deprecated when the custom cuda_arch list was removed. Also fixed up the Aluminum dependencies for Hydrogen and DiHydrogen. Turns out that Aluminum v0.6.0 didn't have a correct version in CMake and thus the interaction with older versions of Hydrogen and DiHydrogen needed to be corrected.
2021-04-20libsigsegv: update to version 2.13. (#23155)Mansour Moufid1-1/+2
2021-04-20Fixing typo tty.fail -> tty.die and monitor docstrings (#23152)Vanessasaurus1-37/+90
This isn't a significant issue, but I noticed that the docstring incorrectly references "tty.fail" and I wanted to quickly fix it to reflect the correct command, tty.die. I also wanted to fix the docstrings to not be large clumps, to what @tgamblin suggested after I wrote this - having one line at the top that is a quick summary, and more verbose after that.
2021-04-20Use xz instead of lzma. XZ utils provides lzma dev files (#23144)Ethan Stam1-1/+1
2021-04-20redset: add versions 0.0.5 and 0.0.4 (#22977)Cameron Stanavige1-2/+4
Also update the url and hash of v0.0.3.
2021-04-20shuffile: add version 0.0.4 (#22976)Cameron Stanavige1-3/+4
Also update the url and hash for v0.0.3.
2021-04-20New package: pmemkvKoyamaSohei1-0/+88
2021-04-20Package libsecret: turn off gobj variant by default (#23070)Sinan1-1/+1
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2021-04-20emacs package: add version @master (#23075)miheer vaidya1-0/+6
2021-04-20argobots: support new variants (#23133)Shintaro Iwasaki1-1/+25
2021-04-20oracle-instant-client package: add dependency on libaio (#23080)iarspider1-0/+2
2021-04-20etsf-io: added missing `mpi` variant (#23083)Massimiliano Culpo1-2/+2
The variant was mentioned in a depends_on directive, but never declared
2021-04-20angsd: fix typo in variants (#23081)Massimiliano Culpo1-8/+9
2021-04-20geopm: remove reference to nonexistent variant (#23084)Massimiliano Culpo1-2/+1
2021-04-20New package: r-mcmcpack (#23139)Glenn Johnson1-0/+30
2021-04-20New package: r-missmethyl (#23140)Glenn Johnson1-0/+48
2021-04-20New package: r-projpred (#23141)Glenn Johnson1-0/+39
2021-04-20lammps: fix typo in variant name (#23085)Massimiliano Culpo1-5/+4
In two conflicts we used +adios instead of +user-adios
2021-04-20Set the minimum version of NCCL for aluminum (#23135)Brian Van Essen1-1/+1
2021-04-20r-experimenthub: new package (#23095)Glenn Johnson1-0/+29
2021-04-20add py-setuptools dependency (#23120)Ryan Marcellino1-0/+1
2021-04-20New package: py-pymumps (#19526)Tom Payerle2-0/+61
* New package: py-pymumps Python bindings for MUMPS, a parallel sparse direct solver * py-pymumps: fixing flake issues * py-pymumps: fix dependency types Following suggestion of @adamjstewart * Update var/spack/repos/builtin/packages/py-pymumps/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pymumps/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pymumps/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pymumps/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pymumps/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pymumps/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-04-20json-c: added two versions and converted to cmake package (#23129)Matthieu Dorier1-3/+18
2021-04-20r-bayesplot: new package (#23091)Glenn Johnson1-0/+34
2021-04-20r-illuminahumanmethylation450kmanifest: new package (#23100)Glenn Johnson1-0/+18
2021-04-20r-champdata: new package (#23093)Glenn Johnson1-0/+21
2021-04-20r-compquadform: new package (#23094)Glenn Johnson1-0/+18
2021-04-20r-illumina450probevariants-db: new package (#23099)Glenn Johnson1-0/+20
2021-04-20r-fastica: new package (#23096)Glenn Johnson1-0/+19
2021-04-20r-gamm4: new package (#23097)Glenn Johnson1-0/+22
2021-04-20r-globaltest: new package (#23098)Glenn Johnson1-0/+26
2021-04-20r-illuminahumanmethylationepicanno-ilm10b4-hg19: new package (#23101)Glenn Johnson1-0/+19
2021-04-20r-illuminahumanmethylationepicmanifest: new package (#23102)Glenn Johnson1-0/+19
2021-04-20Boost: add v1.76.0 (#23118)Tim Haines1-0/+1
2021-04-20r-prettydoc: new package (#23109)Glenn Johnson1-0/+23