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2020-09-01ADIOS: Fix no-MPI Build (#18453)Axel Huebl1-1/+1
Do not apply this patch in no-MPI builds. I think this autotools check logic is generally borked, this will just set it manually to on/off now.
2020-09-01Deprecate spack setup (#18240)Adam J. Stewart6-526/+5
2020-09-01ccs-qcd: Change compile option for aarch64 (#17516)t-nojiri1-7/+17
* ccs-qcd: Change compile option for aarch64
2020-09-01test/relocate.py: skip tests involving patchelf on macOS (#18451)Patrick Gartung1-0/+20
2020-09-01Jali: Fix bugs in CMake section (#18447)Rao Garimella1-8/+4
Fix variant name and cmake variable. Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-09-01Update dependencies: py-torch-geometric (#18265)Jen Herting1-0/+23
* [py-torch-geometric] depends on py-torch-sparse * [py-torch-geometric] setting TORCH_CUDA_ARCH_LIST * [py-torch-geometric] added the rest of the dependencies * [py-torch-geometric] added cuda variant and added more build env vars * [py-torch-geometric] added variant info for depenedencies * [py-torch-geometric] flake8 * [py-torch-geometric] add variant description
2020-09-01Add new package: efivar (#18392)darmac1-0/+28
2020-09-01Added HPC Challenge Benchmark (#18323)Nikolay Simakov1-0/+207
* HPCC Benchmark: added HPC Challenge (HPCC) benchmark * HPCC Benchmark: modified error message on lack of fftw2 interface in MKL * hpcc: fixed styling add one more installation example * hpcc: styling fix Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * hpcc: changed include and lib location setter Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * hpcc: fixed styling add one more installation example * hpcc: removed readme.md * hpcc: develop repo now is in github * hpcc: march arguments are set explicitly in case of intel compilers, added -restrict flag, which needed for older intel compilers (at least <=19.0.5.281) Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-01orbit2: new package at v2.14.19 (#18405)ketsubouchi1-0/+20
2020-09-01fuse-overlayfs: added new package at v1.1.2 (#18435)darmac1-0/+23
2020-09-01ocaml: allow v4.08 and v4.09 to build with gcc10 (#18254)Joseph Wang2-0/+42
fixes #18228. This patch doesn't cover all old versions but it allows packages like whizard to build.
2020-09-01py-tpot: added new package at v0.11.5 (#18385)Sinan1-0/+31
Co-authored-by: sbulut <sbulut@3vgeomatics.com> Co-authored-by: Sinan81 <Sinan81@earth> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-01environment-modules: added v4.5.3 (#18425)Xavier Delaruelle1-1/+2
2020-09-01dihydrogen, hydrogen: dependency on CUB is conditional on CUDA version (#18427)Brian Van Essen2-2/+2
In CUDA 11, CUB is integrated into the CUDA library.
2020-09-01elfutils: add support for debuginfod (#18227)Tim Haines1-3/+15
2020-09-01py-llvmlite: added v0.34 (#18432)Jeffrey Salmond1-1/+3
2020-09-01openfoam: delete print to screen and updated docstrings/comments (#17985)Toyohisa Kameyama1-7/+7
2020-09-01libpam: added new package at v1.0.9 (#18418)darmac1-0/+28
2020-08-31new package: wrf (#18398)MichaelLaufer16-0/+677
* wrf: new package * wrf: fix install dir * wrf: ndown location * Add more compiler and nesting options to wrf package * Fix configure that didn't find pgf90, use tempfile and compile in parallel * WRF v4.2 with parallel I/O support through pnetcdf Signed-off-by: michael laufer <michael.laufer@toganetworks.com> * extend Package, compiler wrapper now used, small fixes Signed-off-by: michael laufer <michael.laufer@toganetworks.com> * Update var/spack/repos/builtin/packages/wrf/package.py fixed typo Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Levi Baber <baberlevi@gmail.com> Co-authored-by: eXact lab <info@exact-lab.it> Co-authored-by: michael laufer <michael.laufer@toganetworks.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-31OPENMPI: add 4.0.5 (#18332)Howard Pritchard1-2/+3
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2020-08-31Update package.py (#18426)Julien Loiseau1-1/+1
Correct boost version to match flecsi
2020-08-31new package: py-update-checker (#18396)Sinan1-0/+22
* new package: py-update-checker * add test deps * Update var/spack/repos/builtin/packages/py-update-checker/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-update-checker/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-update-checker/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * remove lint stuff. Co-authored-by: Sinan81 <Sinan81@earth> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-31New package: py-torch-sparse (#18270)Jen Herting1-0/+38
* [py-torch-sparse] created template * [py-torch-sparse] added dependencies * [py-torch-sparse] extends py-torch-scatter * [py-torch-sparse] added variant cuda and setting env vars * [py-torch-sparse] added homepage and description. removed fixmes * [py-torch-sparse] flake8 * [py-torch-sparse] added variant description * [py-torch-sparse] extends -> depends on * [py-torch-sparse] added dependencies of py-setuptools and py-pytest-runner
2020-08-31Add more cmake patch versions (#18422)Harmen Stoppels1-0/+10
2020-08-31new package: dbus-glib (#18400)ketsubouchi1-0/+21
2020-08-31Add new package: dosfstools (#18410)darmac1-0/+25
2020-08-31Add new package: tesseract (#18411)darmac1-0/+29
2020-08-31Add new package: fipscheck (#18412)darmac1-0/+27
2020-08-31Add new package: libfuse (#18413)darmac1-0/+18
2020-08-31Add new package: hardlink (#18414)darmac1-0/+19
2020-08-31Add new package: libhbaapi (#18415)darmac1-0/+22
2020-08-31Add new package: jimtcl (#18416)darmac1-0/+17
2020-08-31environment-modules: fix version 4.5.2 install (#18421)Xavier Delaruelle1-2/+8
`configure` script of Modules 4.5.2 is a bit too strict and breaks when special options like `--disable-dependency-tracking` are set. This issue will be fixed on Modules project starting version 4.5.3 (cea-hpc/modules#354). This change adapts `configure` options set when installing version 4.5.2 to avoid options unrecognized on this version. Fix #18420
2020-08-31neovim: build on aarch64 (#18136)Toyohisa Kameyama2-34/+24
* libvterm: renumber version and add 1.0.3 neovim: build on aarrch64 * Remove unneeded comment. * libvterm: newer bazaar snapshot version is set to version 0.0. neovim: change for libvterm version change, and libtermkey version bug is fixed. * update libvterm versions.
2020-08-31Add new package: byte-unixbench (#18257)darmac1-0/+21
* Add new package: byte-unixbench * refine install flow * Update var/spack/repos/builtin/packages/byte-unixbench/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-31cp2k: Add depend on libxc@4.3.4. (#18346)t-nojiri1-3/+3
* cp2k: Add depend on libxc@4.3.4. * cp2k: The fix of depend of libxc@4.3.4 was redone.
2020-08-31New packages: py-torch-cluster (#18262)Jen Herting1-0/+39
* [py-torch-cluster] created template * [py-torch-cluster] added dependencies * [py-torch-cluster] setting TORCH_CUDA_ARCH_LIST * [py-torch-cluster] limited extends * [py-torch-cluster] depends on scipy * [py-torch-cluster] added variant cuda and set env vars * [py-torch-cluster] added homepage and description. removed fixmes * [py-torch-cluster] flake8 * [py-torch-cluster] switched to depends_on from extends. * [py-torch-cluster] added variant description * [py-torch-cluster] added py-setuptools and py-pytest-runner as dependencies
2020-08-31New package: py-torch-scatter (#18263)Jen Herting1-0/+39
* [py-torch-scatter] created template * [py-torch-scatter] listed specific version of python * [py-torch-scatter] extends py-torch * [py-torch-scatter] setting TORCH_CUDA_ARCH_LIST * [py-torch-scatter] setting more environemnt variables and added variant cuda * [py-torch-scatter] added homepage and description. removed fixmes * [py-torch-scatter] flake8 * [py-torch-scatter] Added variant description * [py-torch-scatter] extends -> depends_on * [py-torch-scatter] added dependencies of setup tools and pytest-runner
2020-08-31New package: py-torch-spline-conv (#18273)Jen Herting1-0/+37
* [py-torch-spline-conv] created template * [py-torch-spline-conv] specified version of python * [py-torch-spline-conv] extends py-torch-cluster * [py-torch-spline-conv] setting TORCH_CUDA_ARCH_LIST * [py-torch-spline-conv] limiting extension to py-torch * [py-torch-spline-conv] added cuda variant and setting env vars * [py-torch-spline-conv] added homepage and description. removed fixmes * [py-torch-spline-conv] added variant cuda * [py-torch-spline-conv] flake8 * [py-torch-spline-conv] added variant description * [py-torch-spline-conv] extends -> depends_on * [py-torch-spline-conv] added dependencies py-setuptools and py-pytorch-runner
2020-08-31Remove unmatched triple quotes (#18272)Adam J. Stewart3-3/+3
2020-08-31trilinos: added v13.0.0 and PYTHONPATH for exodus.py (#18266)Weston Ortiz1-0/+6
2020-08-31singularity: added v3.6.2 (#18353)Dr. Christian Tacke1-0/+1
2020-08-31glew: added v2.1.0 (#18394)Dr. Christian Tacke1-1/+2
2020-08-31atmi,rocgdb,rocm-dbgapi changes for rocm3.7 (#18404)srekolam3-10/+15
2020-08-31libidl: added new package at v0.8.14 (#18403)ketsubouchi1-0/+19
2020-08-31py-py6s: added new package at v1.8.0 (#18407)Sinan1-0/+25
Co-authored-by: Sinan81 <Sinan81@earth>
2020-08-31lesstif: added dependency on 'libxext' (#18408)h-denpo1-0/+1
2020-08-30minizip: support minizip and miniunz building (#17925)darmac1-0/+16
* minizip: support minizip and miniunz building * minizip: remove comment * refine build flow
2020-08-30lua-luajit: remove duplicated lua-jit and merge to lua-luajit. (#18348)Toyohisa Kameyama2-44/+25
2020-08-30new package: py-planet (#18377)Sinan1-0/+22
* new package: py-planet * flake8 * specify checksum type * improve dependency specs * specify dependency * add test dependencies Co-authored-by: sbulut <sbulut@3vgeomatics.com> Co-authored-by: Sinan81 <Sinan81@earth>
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