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2019-06-17Add py-fiona 1.8.6 (#11736)Adam J. Stewart1-8/+18
* Add py-fiona 1.8.6 * Remove commented code * Python 3 will be required in the next release
2019-06-17Add libgeotiff 1.5.1 (#11731)Adam J. Stewart2-3/+659
2019-06-17Libmesh updates (#11750)Manav Bhatia1-1/+26
* Updates to libMesh: added v1.3.1 checksum, added vtk variant, bugfix for enabling petsc when slepc variant is specified * fixed indentation issues identified by Travis CI * - updates version number - added master as a version - added new variant options for perflog, metaphysicl and blocked storage -- bug-fix for metis * fixes for spack indentation errors * renaming develop to master following review comment of PR.
2019-06-17Add py-pyproj 2.2.0 (#11735)Adam J. Stewart1-12/+19
* Add py-pyproj 2.2.0 * PR review requests * Make Python requirements more explicit
2019-06-17Restrict pism to proj@:4 (#11754)Adam J. Stewart1-1/+1
* Restrict pism to proj@:5 * PROJ.5 is not yet supported either :(
2019-06-17Added newer GoLang versions (#11756)Paul1-1/+5
2019-06-17Restrict ibmisc to proj@:4 (#11753)Adam J. Stewart1-1/+3
* Restrict ibmisc to proj@:5 * Restrict ibmisc to proj@:4
2019-06-17Remove version from py-mpi4py. (#11587)Dan Lipsa1-2/+1
2019-06-17Add version 1.2.2 and 1.2.3 to the package (#11748)Valentin Clement (バレンタイン クレメン)1-0/+2
2019-06-17Fix condition to enable mpi4py. (#11707)Dan Lipsa2-5/+19
* Fix condition to enable mpi4py. * flake8 * Catalyst as paraview for mpi4py. * Catalyst needs numpy and mpi4py. * Remove leftover enable python.
2019-06-17bugfix: use config fixture for stage tests (#11701)Tamara Dahlgren2-6/+23
Some tests introduced in #11528 temporarily set the user's `config:build_stage`, which affected (or created) a config.yaml file in the user's `$HOME/.spack` directory that could leave entries behind if the tests fail. This change ensures only temporary configuration files are used/affected by these tests.
2019-06-17docs: updates for `stage.source_path` (#11702)Tamara Dahlgren3-13/+37
2019-06-16openPMD-api: pybind11>=2.3.0 (#11744)Axel Huebl1-2/+1
Update the dependency on pybind11 to the latest version (constexpr signature support for all C++11 compilers + fixes).
2019-06-16cowsay: new package (#11743)Todd Gamblin1-0/+21
- A program that generates ASCII pictures of a cow with a message. - This is used by the ISC19 Singularity tutorial, so we should probably have it in Spack.
2019-06-16docs: update tutorial page for ISC19 tutorial (#11742)Todd Gamblin1-10/+13
2019-06-16Add py-geopandas 0.5.0 (#11737)Adam J. Stewart1-7/+13
2019-06-16Add libtiff 4.0.10 (#11732)Adam J. Stewart1-1/+2
2019-06-16Add nasm 2.14.02 (#11729)Adam J. Stewart1-3/+4
2019-06-16Add openjpeg 2.3.1 (#11728)Adam J. Stewart1-2/+2
2019-06-16Add py-cligj 0.5.0 (#11727)Adam J. Stewart1-1/+2
2019-06-16Add py-numpy 1.16.4 (#11726)Adam J. Stewart1-1/+2
2019-06-16Add libjpeg-turbo 2.0.2 (#11725)Adam J. Stewart1-1/+2
2019-06-16Update URL for older version of jackcess (#11724)Adam J. Stewart1-1/+2
2019-06-16Add HDF 4.2.14 (#11723)Adam J. Stewart1-3/+4
2019-06-16Add new package py-boto3 (#11722)Adam J. Stewart1-0/+25
2019-06-16Add new package py-s3transfer (#11721)Adam J. Stewart1-0/+22
2019-06-16Add new package py-botocore (#11720)Adam J. Stewart1-0/+30
2019-06-16Add new package py-jmespath (#11719)Adam J. Stewart1-0/+20
2019-06-16Add new package py-freezegun (#11718)Adam J. Stewart1-0/+25
2019-06-16Rename py-dateutil -> py-python-dateutil (#11717)Adam J. Stewart12-38/+54
2019-06-16Add py-aenum package (#11716)Adam J. Stewart1-0/+20
2019-06-15intel: add version 19.0.4 (#11741)Kevin Manalo3-0/+6
2019-06-15Updates to poppler to get pdf2svg working (#11681)Adam J. Stewart2-13/+28
2019-06-15Fix latest HPL for MKL use (#11712)Glenn Johnson1-0/+5
The 2.3 version of HPL needs LDFLAGS set for use of MKL libraries.
2019-06-15docs: fix config tutorial (#11715)Michael Kuhn1-30/+35
This fixes a few typos, adds a hint to `spack config blame` and brings the variant specification in line with other docs sections.
2019-06-15pybind11: v2.3.0 (#11713)Axel Huebl1-0/+2
Add the latest 2.3.0 release and me as package maintainer.
2019-06-15new package: mutationpp (#11705)brietzke1-0/+50
* new package: mutationpp * Update package.py * flake8: correct package.py for flake8-python-style * Update package.py * modifications as requested by reviewer for #11705
2019-06-15r3d: add version 2019-04-24 (#11710)Gabriel Rockefeller1-0/+1
2019-06-14montage: new package at 6.0 (#11696)Justin S1-0/+27
2019-06-14scons: add version 3.0.5 (#11709)Matthias Diener1-0/+1
2019-06-14dtk@develop now requires 'submodules=True' flag (#11694)Satish Balay1-0/+1
2019-06-14swift-t: New release packages for 1.4.3 (#11684)Justin M Wozniak4-8/+52
2019-06-13Ensure mock configuration directory is cleaned up on session exit. (#11700)Tamara Dahlgren1-1/+4
2019-06-13add charliecloud-0.9.10 (#11471)Jordan Ogas1-10/+19
* add charliecloud-0.9.10; remove obsolete version * revert older version changes; add version function * fix space issue * remove url declaration * revert url removal * remove self reference * fix url; removed preferred tag; use newer package url
2019-06-13Add tests for "spack location" command (#11661)Tamara Dahlgren2-0/+135
The "spack location" command was previously untested. This also adds a check to ensure that composite Stages can report whether they were expanded (this property was previously only recorded in Stage but not in CompositeStage).
2019-06-13Always treat DIYStage as expanded (#11663)Tamara Dahlgren2-2/+73
DIYStage, used to treat a user-managed directory as a staging area, should always be considered expanded (i.e. the source has been decompressed if it was stored in an archive). This also: * Adds checks to ensure that the path used to instantiate a DIYStage refers to an existing directory. * Adds tests to check the behavior of DIYStage (including behavior added here, but it was generally untested before).
2019-06-13intel-xed and hpcviewer: adapt to new resource placement (#11676)Mark W. Krentel2-5/+5
Change 'destination' to 'placement' in the use of resource() for intel-xed and hpcviewer. Recent commits (1842873f and eb584d89) changed the directory path for a resource and thus broke the build for these packages.
2019-06-12added jpeg,png,ffmpeg variants to lammps (#10404)marvinbernhardt1-0/+16
2019-06-12Update remaining packages to use Stage.source_path (#11662)Tamara Dahlgren11-30/+46
#11528 updated Stage to always store a Package's source in a fixed directory accessible via `Stage.source_path` This left behind a number of packages which were expecting to access the source code via `Stage.path`. This Updates those packages to use `Stage.source_path` instead. This also updates the name of the fixed directory: The original name of the fixed directory was "src", so if an expanded archive created a "src" directory, then users inspecting the directory structure could see paths like "src/src" (which wasn't wrong but could be confusing). Therefore this also updates the name of the fixed directory to "spack-src".
2019-06-12Make "spack compiler find" check PATH by default (#11683)Massimiliano Culpo5-21/+60
Fixes #11678 `spack compiler find` was not searching `PATH` when provided with no arguments. ea7910a updated the API for the search function and the command logic did not update how it called this function. This also adds a test to ensure that `spack compiler find` will collect compilers from `PATH`.