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2022-07-31wi4mpi: New version 3.6.0 (#31681)Erik Schnetter1-0/+1
* wi4mpi: New version 3.6.0
2022-07-31tests: remove old `changed_files()` testTodd Gamblin1-10/+0
This test relied on an old version of the `flake8_package` fixture that modified the spack repository, but it doesn't do that anymore. There are other tests for `changed_files()` that do a better job of mocking up a git repository with changes, so we can just delete this one.
2022-07-31black: fix `.git-blame-ignore-revs` commitTodd Gamblin1-1/+1
A GitHub rebase merge seems to rewrite commits even if it would be a fast-forward, which means that the commit merged from #24718 is wrong. - [x] update `.git-blame-ignore-revs` with real commit from `develop`
2022-07-31style: simplify arguments with `--tool TOOL` and `--skip TOOL`Todd Gamblin3-59/+69
`spack style` tests were annoyingly brittle because we could not easily be specific about which tools to run (we had to use `--no-black`, `--no-isort`, `--no-flake8`, and `--no-mypy`). We should be able to specify what to run OR what to skip. Now you can run, e.g.: spack style --tool black,flake8 or: spack style --skip black,isort - [x] Remove `--no-black`, `--no-isort`, `--no-flake8`, and `--no-mypy` args. - [x] Add `--tool TOOL` argument. - [x] Add `--skip TOOL` argument. - [x] Allow either `--tool black --tool flake8` or `--tool black,flake8` syntax.
2022-07-31black: ensure that `spack create` templates are black-compliantTodd Gamblin2-114/+101
- [x] remove alignment spaces from tempaltes - [x] replace single with double quotes - [x] Makefile template now generates parsable code (function body is `pass` instead of just a comment) - [x] template checks now run black to check output
2022-07-31black: do not align `sha56`'s with spaces in `spack checksum` outputTodd Gamblin1-9/+1
2022-07-31black: add badge to `README.md`Todd Gamblin1-0/+1
2022-07-31black: bootstrap if black in `PATH` is too newTodd Gamblin1-4/+27
Previously we'd accept any version for bootstrapping black, but we need <= 21. - [x] modify bootstrapping code to check black version before accepting an executable from `PATH`.
2022-07-31black: add .git-blame-ignore-revs toignore black reformatting in blameTodd Gamblin2-2/+15
- [x] add `.git-blame-ignore-revs` to ignore black reformatting - [x] make `spack blame` respect `.git-blame-ignore-revs` (even if the user hasn't configured git to do so)
2022-07-31black: fix format-sensitive testsTodd Gamblin3-7/+7
Some of our tests rely on single vs. double quotes, and others rely on specific line numbers in the source. These needed fixing after the switch to Black.
2022-07-31black: reformat entire repository with blackTodd Gamblin7220-170462/+186733
2022-07-31black: fix style check package and flake8 formatting for blackTodd Gamblin6-117/+90
Black will automatically fix a lot of the exceptions we previously allowed for directives, so we don't need them in our custom `flake8_formatter` anymore. - [x] remove `E501` (long line) exceptions for directives from `flake8_formatter`, as they won't help us now. - [x] Refine exceptions for long URLs in the `flake8_formatter`. - [x] Adjust the mock `flake8-package` to exhibit the exceptions we still allow. - [x] Update style tests for new `flake8-package`. - [x] Blacken style test.
2022-07-31black: clean up noqa comments from most of the codeTodd Gamblin45-111/+178
Many noqa's in the code are no longer necessary now that the column limit is 99 characters. Others can easily be eliminated, and still more can just be made more specific if they do not have to do with line length. The only E501's still in the code are in the tests for `spack.util.path` and the tests for `spack style`.
2022-07-31black: break up long strings that black cannot fixTodd Gamblin40-155/+432
2022-07-31black: configurationTodd Gamblin8-75/+96
This adds necessary configuration for flake8 and black to work together. This also sets the line length to 99, per the data here: * https://github.com/spack/spack/pull/24718#issuecomment-876933636 Given the data and the spirit of black's 88-character limit, we set the limit to 99 characters for all of Spack, because: * 99 is one less than 100, a nice round number, and all lines will fit in a 100-character wide terminal (even when the text editor puts a \ at EOL). * 99 is just past the knee the file size curve for packages, and it means that packages remain readable and not significantly longer than they are now. * It doesn't seem to hurt core -- files in core might change length by a few percent but seem like they'll be mostly the same as before -- just a bit more roomy. - [x] set line length to 99 - [x] remove most exceptions from `.flake8` and add the ones black cares about - [x] add `[tool.black]` to `pyproject.toml` - [x] make `black` run if available in `spack style --fix` Co-Authored-By: Tom Scogland <tscogland@llnl.gov>
2022-07-30MACOSX_DEPLOYMENT_TARGET: MAJOR.MINOR (#31811)Adam J. Stewart1-1/+2
2022-07-29cabana: new version 0.5 (#31807)Sam Reeve1-10/+11
2022-07-29e4s oneapi ci: uncomment pdt (#31803)eugeneswalker1-2/+6
* e4s oneapi ci: uncomment pdt * load oneapi compiler module before executing `spack ci rebuild`
2022-07-29py-segmentation-models-pytorch: add v0.3.0 (#31806)Adam J. Stewart1-2/+7
2022-07-29Add checksum for numba 0.55.2 and 0.56, py-llvmlite 0.39.0 (#31802)iarspider2-2/+7
* Add checksum for numba 0.55.2 and 0.56 * Add checksum for py-llvmlite 0.39.0 * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-07-29e4s ci: add tasmanian +rocm (#31606)eugeneswalker1-0/+1
2022-07-29OpenGL restructure (#31748)Chuck Atkins20-327/+418
* OpenGL: Restructures the OpenGL packages This provides concrete glx and osmesa packages which delegate to virtual libglx and libosmesa packages provided by mesa. This was necessary because GLX and OSMesa both provide gl implementations but with mesa providing the girtual gl package there was no way to properly distinguish which of the two opengl implementations was beiing requested when querying the spec['gl'] dependency. This additional level of indirection allows for that. * OpenGL: Adjust downstream dependents of OpenGL for the restructure This implements the necessary fixes in the packages that depend on OpenGL to work with the restructuring. This also attempts to create a consistent variant for specifying glx or osmesa.
2022-07-29e4s oneapi ci: uncomment parallel-netcdf (#31804)eugeneswalker1-2/+1
2022-07-29vdt: add missing python dependency (#31795)Seth R. Johnson1-4/+8
* vdt: add missing python dependency * vdt: fix dependency and add explicit exe path
2022-07-29gaudi: new version 36.6 (#31799)Wouter Deconinck1-2/+3
No build system changes. Changelog at https://gitlab.cern.ch/gaudi/Gaudi/-/tags/v36r6, comparison at https://gitlab.cern.ch/gaudi/Gaudi/-/compare/v36r5...v36r6
2022-07-29iwyu: new version 0.18 (#31798)Seth R. Johnson1-0/+2
2022-07-29e4s ci: add oneapi stack (#31781)eugeneswalker2-0/+503
* e4s ci: add oneapi stack * shorten padded_length to 256 * comment out pdt and add failure note
2022-07-28Deprecate visit 3.3.0 because it is broken (#31790)Scott Wittenburg1-1/+1
2022-07-28Dyninst: add version 12.2.0 (#31789)Tim Haines1-0/+1
2022-07-28new package: r-signac (#31703)Glenn Johnson2-0/+69
Also includes new package depdendency for r-rcpproll.
2022-07-28New package: trexio (#31769)Evgeny Posenitskiy1-0/+46
* [WIP] first working Spack spec for TREXIO * add patch to prepend -lhdf5_hl to LIBS * Fix spack stype issues * trexio: Fix hashes and hdf5 variant build * trexio: Remove import from Spack * trexio: Fix the isort error * Apply suggestions from code review By @tldahlgren Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-28sentieon-genomics: update version to 202112.05 (#31788)snehring1-0/+1
2022-07-28environment.py: only install root specs explicitly (#31645)Harmen Stoppels2-3/+6
2022-07-28Cabana: add test variants (#31776)Sam Reeve1-20/+16
* Simplify Cabana build flags * Add unit tests, examples, and performance options
2022-07-28py-rsatoolbox: add 0.0.4 (#31785)Manuela Kuhn2-0/+24
2022-07-28New version of Arbor package (#31660)Brent Huisman1-50/+76
2022-07-28gcc: fix unstable patch urls (#31784)Harmen Stoppels5-6/+514
the patch urls dynamically generate a diff, which includes metadata about the git version used, meaning they are not content-addressable. instead ship the patches with spack.
2022-07-28Adding NVIDIA HPC SDK 22.7 (#31770)Filippo Spiga1-0/+4
2022-07-28Fix parsing of clean_url (#31783)Stephen Sachs1-2/+2
In #31618 the idea was to determine the file extension heuristically by dropping query params etc from a url and then consider it as a file path. That broke for URLs that only have query params like http://example.com/?patch=x as it would result in empty string as basename. This PR reverts to the old behavior of saving files as ?patch=x in that case. Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-28mpitrampoline: New version 5.0.1 (#31772)Erik Schnetter1-0/+2
2022-07-27Adding Flamemaster product (#31126)AMD Toolchain Support1-0/+281
* Adding Flamemaster product About FlameMaster: Flamemaster is an open source C++ program package for 0D combustion and 1D laminar flame calculations. * Addressed review comments and style tests errors * Addressed style tests errors * Incorporated spack style of coding * Fixed following spack style error [E228] missing whitespace around modulo operator * Update package.py addressing style issues * Update package.py * Changes to maintainers entry
2022-07-27e4s ci: add slate +rocm (#31602)eugeneswalker1-0/+1
2022-07-27c-blosc2: New version 2.2.0 (#31577)Erik Schnetter1-0/+3
2022-07-27New ExaCA package (#31777)Sam Reeve1-0/+43
2022-07-27Add Caliper v2.8.0 and rocm support (#31632)David Boehme1-18/+23
* Add Caliper v2.8.0 * Add conflict for +rocm+cuda
2022-07-27lcio, podio, edm4hep: Add latest versions (#31749)Thomas Madlener3-0/+4
* lcio: add latest version * edm4hep: Add latest versions * podio: Add latest versions
2022-07-27ZSH: add lmod and local etc variants (#29651)Andrew-Dunning-NNL1-4/+32
* zsh: add lmod and local etc support * zsh: fix indentation
2022-07-27VisIt: Update to VisIt 3.3.0. (#31654)Eric Brugger2-2/+24
2022-07-27WarpX: Add sensei insitu variant (#31542)kwryankrattiger1-5/+13
2022-07-27dd4hep: add v1.21 (#31705)Valentin Volkl1-0/+1