| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2017-10-25 | Specify base branch for flake8 comparison (#5796) | George Hartzell | 1 | -1/+6 | |
| Internally we work against a branch named 'llnl/develop', which mirrors the public repository's `develop` branch. It's useful to be able to run flake8 on our changes, using `llnl/develop` as the base branch instead of `develop`. Internally the flake8 subcommand generates the list of changes files using a hardcoded range of `develop...`. This makes the base of that range a command line option, with a default of `develop`. That lets us do this: ``` spack flake8 --base llnl/develop ``` which uses a range of `llnl/develop...`. | |||||
| 2017-10-25 | delly2: new package (#5820) | Audrey Thoma | 1 | -0/+65 | |
| 2017-10-25 | Zlib gets a 50-60% performance win when compiled with -O2 (#5838) | David Hows | 1 | -0/+4 | |
| Chasing a performance regression has lead me to this change, going from default optimization gives a significant performance win. The sweet spot for zlib is apparently `-O2`, both `-Ofast` and `-O3` are slightly worse (regression is about 3% compared with `-O2) in my testing. Happy to share my methodology with people so we can benchmark on a wider variety of systems. | |||||
| 2017-10-25 | Update for 'eccodes'. (#5899) | Sergey Kosukhin | 3 | -20/+102 | |
| 2017-10-25 | Add package for scalpel@0.5.3 (#5901) | George Hartzell | 1 | -0/+101 | |
| * Add package for scalpel@0.5.3 Scalpel's a bit of a mess, it expects it's users to just unpack the tarball, build it in the resulting directory and install that directory onto their PATH. My install step recapitulates this into prefix.bin. The alternative was rewiring their scripts (perl), which use `FindBin` and expect things to be located in the same dir that the script itself is. Sigh. Lightly tested on CentOS 7. * Flake8 cleanup * Additional flake8 cleanup | |||||
| 2017-10-25 | adding perl-bio-perl and dependencies (#5845) | Audrey Thoma | 11 | -0/+428 | |
| * perl-bio-perl and dependencies * minor fixes * condensing code * fixing doc error | |||||
| 2017-10-25 | Update for 'cdo'. (#5947) | Sergey Kosukhin | 1 | -53/+68 | |
| 2017-10-25 | bwa: add 0.7.17 (#5902) | Eric | 1 | -0/+4 | |
| * bwa: add 0.7.17 * bwa: add 0.7.13 | |||||
| 2017-10-25 | Add old version to bcftools (#5907) | George Hartzell | 2 | -0/+9 | |
| * bcftools v1.2 and htslib v1.2 * dependency change - only require dependencies for v1.2 | |||||
| 2017-10-25 | py-xlsxwriter: new package (#5918) | Audrey Thoma | 1 | -0/+35 | |
| 2017-10-25 | adding bedtools2 v2.23.0 (#5911) | George Hartzell | 1 | -0/+1 | |
| 2017-10-25 | Parallel fix sbangs (#5910) | George Hartzell | 1 | -0/+16 | |
| * Added procedure to edit sbangs of the parallel perl scripts. * Specify the types of perl dependency Adding ", type=('build', 'run')" to the dependency declaration to clarify when and how perl is required * flake8 cleanup | |||||
| 2017-10-25 | adding perl-moose and dependencies (#5912) | Audrey Thoma | 29 | -0/+1033 | |
| * adding perl-moose and dependencies * added missing dependency * fixed flake8 errors | |||||
| 2017-10-25 | Added Hypre Dependency to mfem+hypre (#5929) | Robert Pavel | 1 | -0/+1 | |
| Added missing hypre defendency from mfem's hypre-enabled version | |||||
| 2017-10-25 | r-geneplotter: Create new package. (#5924) | lingnanyuan | 1 | -0/+42 | |
| 2017-10-25 | r-gridextra: Update version to 2.3 (#5915) | lingnanyuan | 1 | -1/+3 | |
| 2017-10-25 | r-geiger and dependencies (#5933) | Audrey Thoma | 4 | -0/+151 | |
| 2017-10-25 | r-rbgl: Create new package. (#5931) | lingnanyuan | 1 | -0/+38 | |
| 2017-10-25 | r-variantannotation: created new package (#5932) | Yifan Zhu | 1 | -0/+54 | |
| 2017-10-25 | r-gseabase: Create new package. (#5930) | lingnanyuan | 1 | -0/+43 | |
| 2017-10-25 | r-bsgenome: created new package (#5928) | Yifan Zhu | 1 | -0/+47 | |
| 2017-10-25 | r-lsei: new package (#5926) | Yifan Zhu | 1 | -0/+41 | |
| 2017-10-25 | r-yarn: created new package (#5925) | Yifan Zhu | 1 | -0/+53 | |
| 2017-10-25 | r-formula: Update version to 1.2-2 (#5923) | lingnanyuan | 1 | -1/+3 | |
| 2017-10-25 | r-quantro: created new package (#5922) | Yifan Zhu | 1 | -0/+49 | |
| 2017-10-25 | r-scales: Update url. (#5921) | lingnanyuan | 1 | -1/+2 | |
| 2017-10-25 | r-doparallel: added list_url and version 1.0.11 (#5920) | Yifan Zhu | 1 | -0/+2 | |
| 2017-10-25 | r-hmisc: Create new package. (#5919) | lingnanyuan | 1 | -0/+53 | |
| * r-hmisc: Create new package. * Correct format. | |||||
| 2017-10-25 | r-openssl: changed homepage url to the CRAN package homepage, added list_url ↵ | Yifan Zhu | 1 | -1/+3 | |
| and added version 0.9.7 (#5848) | |||||
| 2017-10-25 | Glibc 2.26 does not provide xlocale.h (#5862) | Praveen C | 2 | -0/+17 | |
| 2017-10-25 | gdbm: pass in proper CPPFLAGS (#5893) | Ondřej Čertík | 1 | -1/+6 | |
| The problem was that the configure script was not using spack's compiler wrappers. We now pass the proper compiler wrapper using the CC argument explicitly. Fixes #5892. | |||||
| 2017-10-24 | Add a new package for AMG and fix build issues in the amg2013 package (#5909) | Abhinav Bhatele | 2 | -12/+90 | |
| * amg2013: fix build issues * amg: add new package * Update package.py * amg2013: standardize option name * amg: standardize option names | |||||
| 2017-10-24 | hypre: make mpi dependency optional (#5905) | Ondřej Čertík | 1 | -5/+10 | |
| 2017-10-24 | Added Spackage for SW4Lite proxy (#5917) | Robert Pavel | 1 | -0/+54 | |
| Added Spackage for C version of SW4Lite proxy. Fortran will follow once race conditions involving .mod files are resolved | |||||
| 2017-10-24 | 'spack install' can overwrite an existing installation (#5384) | Massimiliano Culpo | 4 | -52/+274 | |
| 'spack install' can now reinstall a spec even if it has dependents, via the --overwrite option. This option moves the current installation in a temporary directory. If the reinstallation is successful the temporary is removed, otherwise a rollback is performed. | |||||
| 2017-10-24 | slepc and petsc version updates (#5863) | Denis Davydov | 2 | -3/+2 | |
| slepc: add 3.8.0 petsc: no longer prefer 3.7.7 | |||||
| 2017-10-24 | r-minfi: created new package (#5887) | Yifan Zhu | 1 | -0/+63 | |
| 2017-10-24 | Add a package: thrust. (#3729) | 健美猫 | 1 | -0/+40 | |
| 2017-10-24 | r-nlme: added list_url and version 3.1-131 (#5890) | Yifan Zhu | 1 | -0/+2 | |
| 2017-10-24 | r-genomicalignments: created new package (#5785) | Yifan Zhu | 1 | -0/+49 | |
| * r-genomicalignments: created new package * r-genomicalignments: using git repo source instead | |||||
| 2017-10-24 | r-reshape: created new package (#5889) | Yifan Zhu | 1 | -0/+38 | |
| 2017-10-24 | r-data-table: added list_url and version 1.10.4-2 (#5888) | Yifan Zhu | 1 | -0/+2 | |
| 2017-10-24 | Fix bug in spack flake8 when no files differ from develop (#5898) | Todd Gamblin | 1 | -1/+4 | |
| 2017-10-24 | r-mass: Update version to 7.3-47 (#5885) | lingnanyuan | 1 | -2/+4 | |
| 2017-10-24 | r-acepack: Create new package. (#5884) | lingnanyuan | 1 | -0/+35 | |
| 2017-10-24 | r-latticeextra: Create new package. (#5883) | lingnanyuan | 1 | -0/+41 | |
| * r-latticeextra: Create new package. * r-latticeextra: Update list_url. | |||||
| 2017-10-24 | r-htmltable: Create new package. (#5882) | lingnanyuan | 1 | -0/+47 | |
| 2017-10-24 | r-htmlwidgets: Update verion to 0.9 (#5881) | lingnanyuan | 1 | -3/+4 | |
| 2017-10-24 | r-checkmate: Create new package. (#5880) | lingnanyuan | 1 | -0/+39 | |
| 2017-10-24 | r-geoquery: created new package (#5879) | Yifan Zhu | 1 | -0/+44 | |
| * r-geoquery: created new package * r-geoquery: added versioned dependency on r | |||||
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