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* htslib: add version 1.6
* samtools: add version 1.6, remove zlib dependency
* bcftools: add version 1.6, switch to using standalone htslib
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Add a package script for libpcap with the current version (1.8.1)
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* Do not call setup_package for fake installs
- setup package could fail if ``setup_dependent_environment`` or other
routines expected to use executables from dependencies
- xpetsc and boost try to get python config variables in
`setup_dependent_package`; this would cause them not to be
fake-installable
* Remove vestigial deptype_query argument to Spec.traverse()
- The `deptype_query` argument isn't used anymore -- it's only passed
around and causes confusion when calling traverse.
- Get rid of it and just keep the `deptypes` argument
* Don't print redundant messages when installing dependencies
- `do_install()` was originally depth-first recursive, and printed "<pkg>
already installed in ..." multiple times for packages as recursive
calls encountered them.
- For much cleaner output, use spec.traverse(order='post') to install
dependencies instead
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Relax/correct the constraint on the version of boost used
by Strelka to match the docs.
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* dealii: fix minor bug in Assimp config
* dealii: request sundials without pthreads
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* Add a bundle package for the ECP proxy applications suite
* Update package.py
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* Add dmlc/mxnet packags.
* Build mxnet+cuda+opencv with GCC-4.8.5 and GCC-5.4.0.
* Build mxnet version 0.10.0, 0.10.0.post1 and 0.10.0.post2.
* Add component version constrain for mxnet 0.10.0.x .
* Go through flake8.
* Replace commit hash with commit date as package version.
* Go throught Travis-CI.
* Update submodule version for 0.10.0.post2.
* Add openmp variant for dmlc-core and mxnet.
* Refine variant handling.
* Fix filter_file for dmlc-core.
* Cut long strings into multiple lies due to PEP8 requirements.
* Fix for PEP8.
* Add CUB_INCLUDE.
* Add py-mxnet: Python binding for MXNet.
* Remove distutils.dir_util.
* Add the profiler variant for mxnet.
* Add a shared variant for nnvm.
* Set USE_OPENMP to OFF by default.
* Fix flake8 errors.
* Fix flake8 issues.
* flake8 issues again.
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* flang: initial commit
* flang: added symlink to clang's flang
* add flang wrapper
* flang wrapper: inject rpath as well
* flang wrapper: PATH -> -B
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* compilers/clang: add flang
* Update clang.py
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closes #5506
The application of patches to upstream executables has been reworked
according to the suggestions of the main developer in #5506. In
particular we are not maintaining a dictionary that maps plumed
versions to the versions of patchable executables, and we are using a
non-interactive command to patch applications.
All the comments on substituting plumed at run-time do not apply here,
since we use RPATH and we want to maintain a 1:1 relationship between
the DAG hash and the plumed library used.
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* r-adsplit: Create new package.
* r-rlang: Update version.
* r-s4vectors: Update version.
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* Add package for strelka@2.8.2
* Fix flake8 complaints
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* Add package for aspell and ass't dictionaries
Add a package definition for aspell.
Add a handful of dictionaries to convince myself that the support for
a bunch of dictionaries works.
* Flake8 cleanup
* Use six's version of urlparse
`urlparse` is not python3 friendly. This works around it (stolen from
`.../cmd/md5.py`).
* Fix incorrect trimming regexp
* Clean up dictionary build
- more parsimonious use of `which` (`make()` has already been made)
- use `sh` instead of `bash`
* Use a helper method to generate info for variants
I figured out my issues with static methods. I *think* that it this
is pythonic.
* Convert aspell to an extendable package
Convert aspell to be extendable and rework the dictionaries to be
extensions.
As it stands, there's a great deal of cut and paste in the
dictionaries, I'll abstract that out next.
The {de,}activate methods copy a great deal of code out of
package.py. Perhaps there's a better way....
* Create AspellDictPackage and use it for the dictionaries
Reduce the repeated code, pull it into a base class.
I'm confused about why 'from spack import *' wasn't more useful in the
base class.
* Oops, -de & -es should be AspellDictPackages too
* Typo: pakcage -> package
* Address some commentary
* Update copyright dates, 2016->2017
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* Pass dirty arg through setup to setup_package
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Requires nghttp2 libraries
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* spec and spec.package.spec can refer to different objects in the
database. When these two instances of spec differ in terms of
the value of the 'concrete' property, Spec._mark_concrete can
fail when checking Spec.package.installed (which requires
package.spec to be concrete). This skips the check for
spec.package.installed when _mark_concrete is called with
'True' (in other words, when the database is marking all specs
as being concrete).
* add test to confirm this fixes #5293
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This adds QMCPACK along with patches to Quantum Espresso for using Quantum Espresso in QMCPACK workflows.
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