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package "explicit" (#31646)
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Issue discussed in https://github.com/spack/spack/issues/31616
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* rocblas: make tensile dependencies conditional
* Remove rocm-smi from the rocblas dependency list
rocm-smi was added to the rocblas dependency list because Tensile was a
dependency of rocBLAS and rocm-smi was a dependency of Tensile. However,
that reasoning was not correct.
Tensile is composed of three components:
1. A command-line tool for generating kernels, benchmarking them, and
saving the parameters used for generating the best kernels
(a.k.a. "Solutions") in YAML files.
2. A build system component that reads YAML solution files, generates
kernel source files, and invokes the compiler to compile then into
code object files (*.co, *.hsco). An index of the kernels and their
associated parameters is also generated and stored in either YAML
or MessagePack format (TensileLibrary.yaml or TensileLibrary.dat).
3. A runtime library that will load the TensileLibrary and code object
files when asked to execute a GEMM and choose the ideal kernel for
your specific input parameters.
rocBLAS developers use (1) during rocBLAS development. This is when
Tensile depends on rocm-smi. The GPU clock speed and temperature must be
controlled to ensure consistency when doing the solution benchmarking.
That control is provided by rocm-smi. When building rocBLAS, Tensile is
used for (2). However, there is no need for control of the GPU at that
point and rocm-smi is not a dependency. At runtime, the rocBLAS library
uses Tensile for (3), but there is again no dependency on rocm-smi.
tl;dr: rocm-smi is a dependency of the tensile benchmarking tool,
which is not a build dependency or runtime dependency of rocblas.
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Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
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This PR contains several fixes for the kallisto package.
- create hdf5 variant as hdf5 is optional beginning with 0.46.2
- provide patch for 0.43 to link against libz
- provide patch for older versions to build again gcc-11 and up
- patch and code to use autoconf-2.70 and up
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Newer versions of botocore (>=1.23.47) support the full IOBase
interface, so the hacks added to supplement the missing attributes are
no longer needed. Conditionally disable the hacks if they appear to be
unnecessary based on the class hierarchy found at runtime.
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* py-panaroo: new package
* moving panaroo to branch
* py-phydms: new package
* added dependencies and new packages
* fixed py-pypdf2 dependencies
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(#31541)
* py-panaroo: new package
* moving panaroo to branch
* updated mizani, plotnine, and pystan versions and requirements
* made suggested fixes
* adding more requested fixes
* added new versions of statsmodels and httpstan
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* py-torch: add version 0.23.0 and fix to built on aarch64
* Add newer versions, fix build issues
* Fix tests
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* tamaas: new version 2.5.0
* tamaas: do not build/install documentation
* tamaas: hash correction for v2.5.0.post1
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* gperftools: Add version 2.10 and add unwind to LDFLAGS
* Make unwind flag conditional on libunwind variant
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* Added fparser 0.0.16
* Created package
* Change from GitHub download to pypi
* py-typing-extensions: 4.3.0
* Added py-pdoc3
* Finished adding py-blight
* Fixed typos
* Fixed dependency specs
* Fixed some things after PR review
* Added @woodruffw as blight maintainer
* Removed maintainer comment block from pdoc3
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* Add connection information to buildcache update command
Ensure that the s3 connection made when attempting to update the content
of a buildcache attempts to use the extra connection information
from the mirror creation.
* Add unique help for endpoint URL argument
Fix copy/paste error for endpoint URL help which was the same as
the access token
* Re-work URL checking for S3 mirrors
Due to the fact that nested bucket URLs would never match the string used
for checking that the mirror is the same, switch the check used.
Sort all mirror URLs by length to have the most specific cases first
and see if the desired URL "starts with" the mirror URL.
* Long line style fixes
Add execptions for long lines and fix other style errors
* Use format() function to rebuild URL
Use the format command to rebuild the url instead of crafing a
formatted string out of known values
* Add early exit for URL checking
When a valid mirror is found, break from the loop
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For a long time the module configuration has had a few settings that use
`blacklist`/`whitelist` terminology. We've been asked by some of our users to replace
this with more inclusive language. In addition to being non-inclusive, `blacklist` and
`whitelist` are inconsistent with the rest of Spack, which uses `include` and `exclude`
for the same concepts.
- [x] Deprecate `blacklist`, `whitelist`, `blacklist_implicits` and `environment_blacklist`
in favor of `exclude`, `include`, `exclude_implicits` and `exclude_env_vars` in module
configuration, to be removed in Spack v0.20.
- [x] Print deprecation warnings if any of the deprecated names are in module config.
- [x] Update tests to test old and new names.
- [x] Update docs.
- [x] Update `spack config update` to fix this automatically, and include a note in the error
that you can use this command.
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* interproscan: new version 5.56-89.0
* interproscan: add maintainer
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Add the latest ADIOS2 release.
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Python's built-in tarfile support doesn't address some general
cases of malformed tarfiles that are already handled by the system
'tar' utility; until these can be addressed, use that exclusively.
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* [py-devito] Add package
Also add dependencies:
- py-nbval
- py-cgen
- py-codepy
- py-contexttimer
- py-pyrevolve
* [py-devito] Fix some typos
* [py-devito] Fix: include examples directory
Upstream issue: https://github.com/devitocodes/devito/issues/1954
* [py-devito] clean up
* [py-devito] clean up dependency packages
* [py-devito] flake8: line too long
* Address @adamjstewart comments
* Make flake8 happy
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
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Add support for CMake builds while preserving autotools support
for older versions of GDAL
* Add GDAL 3.5.0
* Remove GDAL 1
* Add support for new CMake build system
* Change defaults to build all recommended dependencies
* Simplify Autotools flag handling
* Determine version range for drivers
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(#31559)
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* fix cppcheck install and convert to cmake build system
* add white238 as a maintainer
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The goal of this PR is to make clearer where we need a package object in Spack as opposed to a package class.
We currently instantiate a lot of package objects when we could make do with a class. We should use the class
when we only need metadata, and we should only instantiate and us an instance of `PackageBase` at build time.
Modifications:
- [x] Remove the `spack.repo.get` convenience function (which was used in many places, and not really needed)
- [x] Use `spack.repo.path.get_pkg_class` wherever possible
- [x] Try to route most of the need for `spack.repo.path.get` through `Spec.package`
- [x] Introduce a non-data descriptor, that can be used as a decorator, to have "class level properties"
- [x] Refactor unit tests that had to be modified to reduce code duplication
- [x] `Spec.package` and `Repo.get` now require a concrete spec as input
- [x] Remove `RepoPath.all_packages` and `Repo.all_packages`
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(#31277)
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v5.3.0 (#31513)
* py-nbmake: add v1.3.0
* Add newer versions
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