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2018-12-22Add missing module env variable setting causing OSS to fail. (#10182)Jim Galarowicz1-0/+11
2018-12-22r-corhmm: new package at 1.22 (#9859)Justin Stanley1-0/+31
2018-12-22petsc-3.10.3: syncs with superlu-dist-6.1. (#10166)Satish Balay1-2/+6
2018-12-21gpgme: new package (#10174)Levi Baber1-0/+19
2018-12-21add charliecloud 0.9.6 (#10176)Jordan Ogas1-0/+1
2018-12-21py-numba: fix py-llvmlite version (#10175)Matthias Wolf1-1/+1
2018-12-21Add libiconv variant to glib (#10165)George Hartzell1-0/+6
Enable explicitly building glib with or without libiconv. Heads up: if you build with ~iconv but there is something else in the spec that includes libiconv then glib will *still* automagically discover it and the build will fail.
2018-12-21Remove /nfs/tmp2 from default build_stage locations (#10170)Elsa Gonsiorowski, PhD2-7/+4
* Remove /nfs/tmp2 from default configuration * /nfs/tmp2 is going away from LC... and doesn’t exist for the rest of the world. * update documentation to remove /nfs/tmp2 as well
2018-12-20R3D spackage (#10164)Daryl W. Grunau1-0/+49
* r3d spackage * address Adam's review comments * fix flake8: too many blank lines
2018-12-20update h5py to 2.9.0 (#10169)Sajid Ali1-1/+2
* modified: var/spack/repos/builtin/packages/py-h5py/package.py * Update package.py * Update package.py
2018-12-20Update TFEL package (#9995)thelfer1-6/+39
* add the tfel package * fix the tfel package * fix the tfel package * fix the tfel package * Taking Adam J. Steward' remarks into account * fixes trailing white spaces * Update description * Update dependencies following @adamjstewart adices * Style fixes * Style fixes * Add java optional support * add the maintainers attribute (following @alalazo advice), disable interface not selected (following @adamjstewart advice) * flake8 fixes * Fix Cast3M and python-bindings support. Python detection is made compatible with cmake'FindPythonLibs module (at least how it is used in TFEL) * Style fixes * Style fixes * Fix test on python version * Follow @adamjstewart advices: code is much cleaner and readable * Small fix * Small fix * Add comment * Small fix in cmake option * try again (trying to overcome Travis CI unstable build process)
2018-12-20OpenFOAM-v1812 - new version (#10167)Mark Olesen1-0/+2
2018-12-20Fix docker builds (#9805)Omar Padron3-29/+67
* move docker test logic to share/spack/qa * update Dockerfile for archlinux
2018-12-20fix multiple issues with the docker images (#9718)Omar Padron5-8/+35
- fixed an issue where some undesirable parts of the spack source tree were being copied into the image context. - added a workaround for a tty ioctl warning on ubuntu - adjusted how the main images are built so that `RUN spack ...` works automatically for child images that base themselves on them.
2018-12-20Performance improvements for CDash reporterZack Galbreath1-9/+12
* Record build output as an array of lines rather than concatenating to a single large string. * Use string.find to avoid running re.search on every line of output.
2018-12-20Include accurate build time in CDash reportZack Galbreath1-6/+10
2018-12-20Report current git commit of Spack to CDashZack Galbreath2-10/+30
When using the CDash reporter, upload a Update.xml file that indicates the hash of Spack's current git commit.
2018-12-20Make sure to urlencode cdash submit parametersScott Wittenburg1-3/+9
2018-12-20Get buildId from CDash at submit timeZack Galbreath1-2/+21
Pass extra data when submitting to CDash. If CDash responds with a buildId, construct and display helpful URL that links to the uploaded report.
2018-12-20Allow more customization for CDash reporterZack Galbreath8-26/+65
Add new command line arguments to `spack install` that allow users to set the build name, site name, and track in their CDash report.
2018-12-20Avoid UnboundLocalErrorZack Galbreath1-0/+1
Make sure cdash_phase is defined before referring to it.
2018-12-20packages/phist: add maintainer (#10162)jthies1-0/+2
2018-12-19CGNS: Allow use of git branch versions (#10156)Greg Sjaardema1-0/+3
* CGNS: Allow use of git branch versions Add ability to use git `master` and `develop` branches of the CGNS library. The `seacas` package sometimes needs to use the `master` or `develop` branch due to some new changes to the parallel I/O implementation in CGNS which has not yet been released. * CGNS: Reorder to put newest version on top Based on review comments, place newest version (develop) first in list.
2018-12-19env: all commands that disambiguate specs should be env-awareTodd Gamblin19-26/+55
- some commands were missed in the rollout of spack environments - this makes all commands that need to disambiguate specs restrict the disambiguation to installed packages in the active environment, as users would expect
2018-12-19dyninst: patch to build dyninst with older gcc (#10160)Mark W. Krentel2-0/+74
* dyninst: patch to build dyninst with older gcc Add 'v9.3.2-auto.patch'. This patch changes some 'auto t: type' usage to the older but equivalent 'type.begin()'. This allows building dyninst 9.3.2 with gcc 4.4 which doesn't support the newer syntax. This patch is harmless with newer gcc. * Fix typo in patch. (My bad for sloppy cut-and-paste.) * Restrict the patch to gcc 4.7 and earlier. gcc 4.8 supports the newer usage and thus doesn't need the patch.
2018-12-19sqlite: add 3.26.0 (#10138)Michael Kuhn3-90/+4
2018-12-19updated checksum for kallisto (#10158)Owen Solberg1-1/+1
2018-12-19fetch_strategy: improve GitFetchStrategy (#10153)Michael Kuhn2-12/+17
Currently, only the Git repsository's URL shows up in the `spack info` output, which makes it hard to distinguish different versions: ``` Safe versions: develop [git] https://github.com/LLNL/H5Z-ZFP.git 0.8.0 [git] https://github.com/LLNL/H5Z-ZFP.git 0.7.0 [git] https://github.com/LLNL/H5Z-ZFP.git ``` This change adds additional information as shown when cloning a Git repository: ``` Safe versions: develop [git] https://github.com/LLNL/H5Z-ZFP.git on branch master 0.8.0 [git] https://github.com/LLNL/H5Z-ZFP.git at commit af165c4 0.7.0 [git] https://github.com/LLNL/H5Z-ZFP.git at commit 58ac811 ```
2018-12-19phist tag 1.7.5 was moved (#10155)jthies1-1/+1
2018-12-19Updated Dakota to 6.9 (#10157)sknigh1-1/+5
* Updated Dakota to 6.9 * Change comment wording
2018-12-19Add python bindings to libxslt (#10149)Adam J. Stewart1-9/+27
2018-12-19Add missing libiconv dependency to libxml2 (#10148)Adam J. Stewart1-5/+18
2018-12-19Add list_url to docbook-xml (#10146)Adam J. Stewart1-10/+7
2018-12-19Add latest version of docbook-xsl (#10147)Adam J. Stewart2-12/+48
2018-12-19Restrict patch to oldest version of libbsd (#10145)Adam J. Stewart1-2/+4
2018-12-19PETSc: add version 3.10.3 (#10154)Satish Balay1-0/+1
2018-12-19mapserver: new package (#10067)Neil Flood1-0/+100
2018-12-19Added labels in github issue templates (#10128)Massimiliano Culpo3-2/+3
2018-12-18Add additional info to MesonPackage docs (#10133)Adam J. Stewart1-0/+44
* Add additional info to MesonPackage docs * No Pygments lexer for Meson code, default to none
2018-12-18fix for mpifileutils package (#10142)Elsa Gonsiorowski, PhD1-8/+17
* proper include & linking of libarchive * due to linux headers, mfu can't build on mac * hard code deps in configure line rather than relying on pkg-config * +xattr during config * must also link the lib * find mfu.h * long lines
2018-12-18WarpX: Added dependency on fftw when +psatd (#10144)Dave1-0/+2
2018-12-18flatbuffers: add 1.10.0 (#10137)Matthias Wolf2-1/+2
Also unpin the version from the arrow package.
2018-12-18Add pdf variant to cairo (#10135)Adam J. Stewart1-12/+19
2018-12-18clp: add build_directory, remove old hack (#10112)Justin Stanley1-4/+1
* clp: add build_directory, remove old hack * clp: use spack-build for building
2018-12-17Add latest version of libxkbcommon (#10134)Adam J. Stewart1-12/+9
2018-12-17Add variant to ecflow to choose whether to use static boost libraries. (#9933)Alberto Chiusole1-1/+10
When this variant is set, it requires boost to be built with the +pic variant.
2018-12-17Add thread count variant to atlas (#9999)David Hows1-0/+11
* Add thread count variant Atlas automatically configures itself and optimizes to run with a fixed number of threads. This can be overridden during compile by setting a flag and atlas will tune itself to use the specified number, rather than all system CPUs. Default value is the existing logic, autoconfigure. * Fix Linting * Another lint for longline
2018-12-17Add spack package for saga-gis (#10018)Jannek Squar1-0/+80
* Add spack package for saga-gis * Adjusted license header * Adjust saga-gis package, added fixme comments * Removed version constraint * Fixed fixme comment
2018-12-17git: add version 2.20.1 (#10130)Matthias Diener1-0/+5
2018-12-17Added RocksDB package (#10084)Omar Awile1-0/+61
* Added rocksdb package * Fixes based on @tristan0x and @pramodk comments * Cleanup * A couple minor fixes based on @adamjstewart 's advice * Fixed flake8 errors