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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
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Co-authored-by: Alexander Van Craen <40516079+vancraar@users.noreply.github.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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* update to 1.1.1
* add maintainers
* add 1.1.0; set default
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* ensure umpire~cuda~rocm when ~cuda~rocm
* update spglib
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Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 4.1.1 to 4.2.1.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](https://github.com/docker/build-push-action/compare/2eb1c1961a95fc15694676618e422e8ba1d63825...0a97817b6ade9f46837855d676c4cca3a2471fc9)
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updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3.1.2 to 3.1.3.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](https://github.com/actions/upload-artifact/compare/0b7f8abb1508181956e8e162db84b466c27e18ce...a8a3f3ad30e3422c9c7b888a15615d19a852ae32)
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updated-dependencies:
- dependency-name: actions/upload-artifact
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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NMake makefiles are still called makefiles. The corresponding builder
variable was called "nmakefile", which is a bit unintuitive and lead
to a few easy-to-make, hard-to-notice mistakes when creating packages.
This commit renames the builder property to be "makefile"
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* updates for VELOC 1.6
* veloc: add v1.7
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Co-authored-by: Bogdan Nicolae <bogdan.nicolae@acm.org>
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Enclose variable tracking root in quotes.
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* Cloverleaf-ref: proposal for a -ref version only
* Cloverleaf-ref: fixing typo.
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Co-authored-by: fpanichi <fpanichi@amd.com>
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Extensionless archives requiring two-stage decompression and extraction
require intermediate archives to be renamed after decompression/extraction
to prevent collision. Prior behavior attempted to cleanup the intermediate
archive with the original name, this PR ensures the renamed folder is
cleaned instead.
Co-authored-by: Dan Lipsa <dan.lipsa@khq.kitware.com>
Co-authored-by: John Parent <john.parent@kitware.com>
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Smart alias completion introduced in #39499 wasn't as smart as it needed to be, and
would complete any invalid command prefix and some env names with alias names.
- [x] don't complete aliases if there are no potential completions
e.g., don't convert `spack isnotacommand` -> `spack concretize`
- [x] don't complete with an aliases if we're not looking at a top-level subcommand.
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* Perform external spec detection with multiple workers
The logic to perform external spec detection has been refactored
into classes. These classes use the GoF "template" pattern to account
for the small differences between searching for "executables" and
for "libraries", while unifying the larger part of the algorithm.
A ProcessPoolExecutor is used to parallelize the work.
* Speed-up external find by tagging detectable packages automatically
Querying packages by tag is much faster than inspecting the repository,
since tags are cached. This commit adds a "detectable" tag to every
package that implements the detection protocol, and external detection
uses it to search for packages.
* Pass package names instead of package classes to workers
The slowest part of the search is importing the Python modules
associated with candidate packages. The import is done serially
before we distribute the work to the pool of executors.
This commit pushes the import of the Python module to the job
performed by the workers, and passes just the name of the packages
to the executors.
In this way imports can be done in parallel.
* Rework unit-tests for Windows
Some unit tests were doing a full e2e run of a command
just to check a input handling. Make the test more
focused by just stressing a specific function.
Mark as xfailed 2 tests on Windows, that will be fixed
by a PR in the queue. The tests are failing because we
monkeypatch internals in the parent process, but the
monkeypatching is not done in the "spawned" child
process.
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Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.1 to 7.4.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.1...7.4.2)
---
updated-dependencies:
- dependency-name: pytest
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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* Docs/Packaging guide: Add BundlePackage
* Adjusted version ordering note to reflect convention.
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* Write timing information for installs from cache
* CI: aggregate and upload install_times.json to artifacts
* CI: Don't change root directory for artifact generation
* Flat event based timer variation
Event based timer allows for easily starting and stopping timers without
wiping sub-timer data. It also requires less branching logic when
tracking time.
The json output is non-hierarchical in this version and hierarchy is
less rigidly enforced between starting and stopping.
* Add and write timers for top level install
* Update completion
* remove unused subtimer api
* Fix unit tests
* Suppress timing summary option
* Save timers summaries to user_data artifacts
* Remove completion from fish
* Move spack python to script section
* Write timer correctly for non-cache installs
* Re-add hash to timer file
* Fish completion updates
* Fix null timer yield value
* fix type hints
* Remove timer-summary-file option
* Add "." in front of non-package timer name
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Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
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Edit configuration file to use the Spack compiler wrappers.
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* allow to build latest version of cp2k with cmake
* apply black
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* neko: add v0.6.1 and fix package
* Change to a conditional variant for gslib
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Co-authored-by: github-actions <github-actions@users.noreply.github.com>
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Co-authored-by: github-actions <github-actions@users.noreply.github.com>
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(#37620)
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Unzip required during build otherwise configuration of luarocks fails during installation of lua@5.3.6 on ubuntu 22.04 w/o system unzip.
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* Add Figcone Package
* Fix the style
* add url
* fix style removing whitespace of a blanck line
* remove versions
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* r-tinytiger: Add tinytiger R package.
* Fix homepage.
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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The condition probably did not get updated when the behavior of the version specifier changed.
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* seacas: Set TPL_ENABLE_Pthread=ON when +thread_safe
This should fix #39702
Basically, following suggestion of error message and setting
TPL_ENABLE_Pthread to the value of the boolean spack variant thread_safe
* seacas: Fix style issue
Add space after comment #
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* cgns: Add -fPIC to Fortan/C compilation flags
This should fix #39699
* cgns: Add -fPIC compilation flags when +fortran
Incorporating suggestions of @aumuell with addition of making +pic required when +fortran
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* Add libpostal.
* Add back Spack license.
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* r-sets: Add r-sets.
* r-sets: Fix R dependency for first version.
* r-sets: Remove package versions for which a compatible version of R cannot be installed.
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* r-humaniformat: Add r-humaniformat.
* r-humaniformat: Remove blank line at end of file.
* Fix broken link in description.
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dependency when +python specified (#39774)
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