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2020-05-22Mark Valgrind as conflicting with macOS > 10.13 (#16759)Seth R. Johnson1-0/+3
``` '/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-valgrind-3.15.0-mtir7ubjz7mqmjbb7bogze2qm35hl4ze/spack-src/configure' '--prefix=/ornldev/code/spack/opt/spack/clang-11.0.0-apple/valgrind/mtir7ub' '--enable-only64bit' '--build=amd64-darwin' 1 error found in build log: 43 checking host system type... x86_64-pc-darwin 44 checking for a supported CPU... ok (x86_64) 45 checking for a 64-bit only build... yes 46 checking for a 32-bit only build... no 47 checking for a supported OS... ok (darwin) 48 checking for the kernel version... unsupported (18.7.0) >> 49 configure: error: Valgrind works on Darwin 10.x, 11.x, 12.x, 13.x, 14.x, 15.x, 16.x and 17.x (Mac OS X 10.6/7/8/9/10/11 and macOS 10.12/13) ```
2020-05-22[Trilinos] Make MPI optional (#16685)Seth R. Johnson1-288/+213
* Make MPI optional for Trilinos * Use 'define' and 'define_from_variant' in trilinos package
2020-05-22ParaView: conflict ~opengl2 with versions 5.5 and up (#16742)Ethan Stam1-0/+3
2020-05-22prrte uses libev data structues, not libevent (#16530)Rob Latham1-1/+2
* use libevent not libev * Add Ralph Castain as a maintainer
2020-05-22ffr: add flag to use fixed format in which the length of one line of the ↵noguchi-k1-0/+2
source code is 255 when building with Fujitsu compiler. (#16737) * ffr: add flag to use fixed format in which the length of one line of the source code is 255 when building with Fujitsu compiler. * ffr: changed to elif.
2020-05-22julia: Fix LLVM build failing with newer versions of CMake (#16738)Carlos Bederián1-1/+2
2020-05-22fraggenescan: new package at v1.31 (#16587)Justin S1-0/+25
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-22IWYU: update include-what-you-use version (#16760)Seth R. Johnson1-0/+2
2020-05-22superlu-dist: added v6.2.0 and v6.3.1 (#16704)Mathias Anselmann1-0/+2
2020-05-22julia: added v1.4.1 (#16739)Carlos Bederián1-0/+1
2020-05-22genometools: require cairo pdf backend (#16753)Justin S1-1/+1
2020-05-22sundials: added v5.2.0 and v5.3.0 (#16752)Cody Balos1-0/+2
2020-05-22charmpp: added support to Fujitsu compilers. (#16756)Toyohisa Kameyama2-0/+64
2020-05-21autotools: delete args from postdep objects when %fj (#16274)Tomoki, Karatsu1-0/+3
2020-05-21r-boruta: new package at v7.0.0 (#16746)Amjad Kotobi1-0/+23
2020-05-21r-caracas: new package at v1.0.0 (#16748)Amjad Kotobi1-0/+23
2020-05-20unifyfs: update gotcha dependency version (#16736)Cameron Stanavige1-3/+2
The dev branch of UnifyFS now depends on the latest release of GOTCHA, and will future releases. This updates our spackage to depend on the correct version of GOTCHA depending on the version of UnifyFS being installed.
2020-05-20r-spatstat: New package (#16729)Amjad Kotobi1-0/+32
* r-spatstat: New package * r-spatstat: version dependency added
2020-05-20Install gaussian using their scripts (#16723)Antonio Arena1-34/+42
* Create VMD recipe This is a new recipe to install VMD on Spack-managed hosts. * Fix lint errors. * Use plain Package As per peer-review: - Use Package to build - Use configure to create a Makefile - Use install to copy files to prefix directory * Move VMD package to correct path, duh... * Restructure description so first short paragraph can be used by module files. * Add an empty line as suggested by peer-review. That's how you separate paragraphs. * Remove extra spaces. * Use setup_build_environment since that's where you're supposed to export OS variblaes. Thanks to peer-review for spotting this. * Create VMD recipe This is a new recipe to install VMD on Spack-managed hosts. * Fix lint errors. * Use plain Package As per peer-review: - Use Package to build - Use configure to create a Makefile - Use install to copy files to prefix directory * Move VMD package to correct path, duh... * Add Cubist (#16069) * Add Cubist * enhance recipe * Not using OS module anymore * remove white space * Fix build shell * make Flake8 happy * use bash shell for build * Convert it To MakefilePackage as per peer-review * dbcsr: expose all options, check openblas feats (#16034) * dbcsr: expose all options, check openblas feats * dbcsr: use Ninja to build, ensure serialized tests * dbcsr: add myself as maintainer * MPark.Variant: GCC 7.3.1 Conflict (#16081) * MPark.Variant: GCC 7.3.1 Conflict Due to an ICE in this specific patch-release of GCC, compile errors in downstream packages should be avoided with a clean conflict. * Fix superfluous spaces Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Fix typo Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Move VMD package to correct path, duh... * Add an empty line as suggested by peer-review. That's how you separate paragraphs. * New matlab versions (#16086) * Add new version 1.1.1 (#16087) * New package bonniepp added (#16091) * openbabel: fix compilation errors (#16090) - Disable maeparser as it is broken with CMake - Added missing dependencies * singularity: updated maintainer list (#16093) * New version xrootd-4.11.3 (#16092) * I added Gaussian 16. I also execute bsd/install to fix scripts instead of filtering them. * revert VMD so only Gaussian is in my PR. * revert VMD so only Gaussian is in my PR. * revert VMD so only Gaussian is in my PR. * I added myself as a package maintainer. Co-authored-by: asmaahassan90 <31959389+asmaahassan90@users.noreply.github.com> Co-authored-by: Tiziano Müller <tiziano.mueller@chem.uzh.ch> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com> Co-authored-by: Amjad Kotobi <amjadkotbi@gmail.com> Co-authored-by: athanasio <athanasio@users.noreply.github.com> Co-authored-by: Carlos Arango Gutierrez <arangogutierrez@gmail.com>
2020-05-20mxnet: Fix dependency and add new version. (#16714)Toyohisa Kameyama2-7/+59
* mxnet: Fix dependency and add new version. 1. Fix opencv and numpy dependency. 2. Add version 1.6.0. * typo in patch is fixed. fixed spec access.
2020-05-20add SST packages and dependencies (#16618)Jeremy14-56/+713
2020-05-20externals: allow package prefs to configure default not buildable (#16735)Greg Becker2-4/+74
Allows `all` to be configured non-buildable in packages.yaml. The following config would only allow zlib to be built by Spack, all other packages would have to be found as externals. ``` packages: all: buildable: False zlib: buildable: True ```
2020-05-20tests: check presence not equality for rpath changes (#16637)Tamara Dahlgren1-3/+9
Fixes #16636
2020-05-19py-scikit-learn: add latest version (#16731)Adam J. Stewart1-1/+2
2020-05-19mantevo: update urls to new website (#16732)Christoph Junghans9-9/+9
2020-05-19py-tensorflow-estimator: new version 2.2.0 (#16726)Andrew W Elble1-3/+5
2020-05-19Add new Acts release (#16718)Hadrien G1-0/+1
2020-05-19Introduce version 1.0.0 for py-xenv and remove unreleased development ↵Thomas Madlener2-5/+3
release (#16722) Problems in 0.0.4 should be fixed for 1.0.0
2020-05-19update URL and sha256 for aws-parallelcluster 2.7.0 (#16717)ddeidda1-1/+2
Signed-off-by: ddeidda <ddeidda@amazon.com>
2020-05-19openssl: Be Explicit About perl Usage (#16721)Dr. Christian Tacke1-0/+3
The openssl build process can use the wrong perl for various reasons, including: * Wrong value in PERL env var * The build process first looks for `perl5`, which the spack system does not provide, but some other distributions provide it. That way, the build process can end up using the wrong perl. Stop all of these problems by explicitly setting PERL to the to be used dependency.
2020-05-19Add new package: http-post (#16678)darmac1-0/+35
* Add new package: http-post * refine version name
2020-05-19Add new package: http-ping (#16675)darmac1-0/+34
* Add new package: http-ping * refine version name
2020-05-19Pipelines: Ensure consistent spack version for entire pipelineScott Wittenburg1-16/+4
Also retry jobs always, as script failure is not confined to only our spack ci rebuild command exit code.
2020-05-18[podio] fix root cxxstd dependency (#16708)vvolkl1-11/+6
2020-05-18Add new package: http-load (#16676)darmac1-0/+33
* Add new package: http-load * refine version format * fix date/version error
2020-05-18Add new package: http-get (#16677)darmac1-0/+35
* Add new package: http-get * refine version name
2020-05-18move source dir to last cmake arg (#16709)Greg Becker1-2/+2
2020-05-18TensorFlow: add new versions (#16703)Adam J. Stewart1-0/+3
2020-05-18r-decipher: new package at 2.12.0 (#16705)Justin S1-0/+27
2020-05-18angsd: add 0.933, add misc programs to install (#16669)Justin S1-1/+17
* angsd: add 0.933, add misc programs to install * angsd: add r variant
2020-05-18paraview: use kits by default (#16698)Utkarsh Ayachit1-0/+13
Adding a variant to enable/disable kits and making the default use kits.
2020-05-18r-tensor: New package (#16697)Amjad Kotobi1-0/+20
2020-05-18r-goftest: New package (#16699)Amjad Kotobi1-0/+20
2020-05-18Update Apache arrow to 0.17.1 (#16701)Nick Robison1-0/+2
Update Arrow to the latest version. Also add an additional dependency on `thrift` when building with Parquet support.
2020-05-18Add new package: hyperscan (#16681)darmac1-0/+31
* Add new package: hyperscan * hyperscan: remove cmake_args()
2020-05-18New package: py-pyeda (#16416)archxlith1-0/+18
* New package: py-pyeda * py-pyeda: added dep for python 3.3 or greater * [py-pyeda] Added space in depends_on python line
2020-05-18PyYAML: fix linking to libyaml (#16682)Adam J. Stewart1-0/+32
2020-05-18revocap-refiner: fixed typo in pic flags (#16694)h-denpo1-1/+1
2020-05-17hwloc: Add libudev variant. (#16615)Toyohisa Kameyama1-0/+7
* hwloc: Add libudev variant. * typo fix. * Wrong version for libudev variant is fixed. * Add maintainers.
2020-05-17Add new version of COSMA: 2.2.0 (#16672)Marko Kabic1-13/+10
* Updated versions of COSMA. * Added an empty line for formatting. * Switched to sha256. * Renamed gpu variant to cuda. Extending the CudaPackage base class.
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