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2022-10-29libtiff: CMake support, internal codecs variants (#33591)Adam J. Stewart1-23/+74
2022-10-28Fixed a bad variant when statement for including cuDNN. (#33595)Brian Van Essen1-1/+1
2022-10-28new packages (py-auditwheel, py-medaka, py-parasail, py-progressbar33, ↵Luke Diorio-Toth8-0/+172
py-pyspoa) and updates to others (py-scikit-build, py-ont-fast5-api) (#33541) * Added py-medaka and dependencies * fixed py-parasail build error * medaka still doesn't have correct linked libdeflate * fixed pyspoa deps * added htslib.patch, confirmed builds and runs * fixed style * Update var/spack/repos/builtin/packages/py-auditwheel/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * made requested changes * added targets for pyspoa dep Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-10-28netlib-scalapack: fix build error with oneapi compilers (#33539)Satish Balay1-1/+1
/home/xsdk/spack.x/lib/spack/env/oneapi/icx -DAdd_ -Dscalapack_EXPORTS -I/opt/intel/oneapi/mpi/2021.7.0/include -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o -MF CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o.d -o CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o -c /home/xsdk/spack.x/spack-stage/spack-stage-netlib-scalapack-2.2.0-uj3jepiowz5is4hmdmjrzjltetgdr3lx/spack-src/BLACS/SRC/dgamx2d_.c /home/xsdk/spack.x/spack-stage/spack-stage-netlib-scalapack-2.2.0-uj3jepiowz5is4hmdmjrzjltetgdr3lx/spack-src/BLACS/SRC/igsum2d_.c:154:7: error: call to undeclared function 'BI_imvcopy'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration] BI_imvcopy(Mpval(m), Mpval(n), A, tlda, bp->Buff); ^
2022-10-28starpu: add papi and blocking variants (#33580)Lucas Nesi1-0/+7
2022-10-28ReFrame: add versions up to v3.12.0 (#33446)Vasileios Karakasis1-0/+13
Also adds 4.0 dev versions
2022-10-28gitlab ci: patched make 4.3.0 (#33583)Harmen Stoppels16-31/+33
2022-10-28patchelf: add v0.16.1 (#33579)Harmen Stoppels1-0/+1
2022-10-28openblas %oneapi: extend application of ↵eugeneswalker1-1/+1
--Wno-error=implicit-function-declaration (#33576)
2022-10-27CachedCMakePackage: Add back initconfig as a defined phase (#33575)Chris White3-4/+7
Also: add type annotation to indicate that "phases" is always a tuple of strings.
2022-10-27py-scikit-learn: add v1.1.3 (#33534)Adam J. Stewart1-0/+1
2022-10-27nextflow: add 22.10.1 (#33574)Diego Alvarez1-0/+5
* Add nextflow 22.10.1 * Add trailing comma (style)
2022-10-27GDAL: multi-build system support (#33566)Adam J. Stewart1-56/+61
2022-10-27Add vasp variant to control shmem compile options (#33531)rfbgo1-1/+6
Currently the vasp package always enables the use of shmem to reduce algorithm memory usage (see https://www.vasp.at/wiki/index.php/Precompiler_options). This is great,but on some systems gives compile errors with the interoperability of C and Fortran. This PR makes that shmem flag optional, but retains the existing default on behavior.
2022-10-27support pkgconfig for mkl (#33382)Robert Cohn1-0/+1
2022-10-27ophidia-analytics-framework: new package at v1.7 (#33567)SoniaScard1-0/+49
* ophidia-analytics-framework: new package at v1.7 * Fix code style in ophidia-analytics-framework Co-authored-by: SoniaScard <SoniaScard@users.noreply.github.com> Co-authored-by: Donatello Elia <eldoo@users.noreply.github.com>
2022-10-27py-torchdata: add v0.5.0 (#33568)Adam J. Stewart1-0/+2
2022-10-27Support ROCm backing in DiHydrogen (#33563)Brian Van Essen2-8/+30
* Added support for building the DiHydrogen package and LBANN extensions to DiHydrogen with ROCm libraries. Fixed a bug on Cray systems where CMake didn't try hard enough to find an MPI-compatible compiler wrapper. Make it look more. Added support for the roctracer package when using ROCm libraries. * Fixed how ROCm support is defined for pre-v0.3 versions.
2022-10-27ECP-SDK: enable hdf5-vfd-gds when +cuda (#33300)Stephen McDowell2-8/+17
- hdf5-vfd-gds: - Add new version 1.0.2 compatible with hdf5@1.13. - CMake is a build dependency. - Set `HDF5_PLUGIN_PATH` in the runtime environment, this plugin is loaded dynamically. - SDK: - The VFD GDS driver only has utility when CUDA is enabled. - Require hdf5-vfd-gds@1.0.2+ (1.0.1 and earlier do not compile).
2022-10-27Add new versions to wi4mpi (#33569)Carson Woods1-0/+3
2022-10-27Update macOS Python version in CI to 3.10 (#33560)Massimiliano Culpo1-1/+1
2022-10-27Paraview catalyst support (#33369)Ben Boeckel1-0/+17
* paraview: add support for Catalyst 1 APIs * paraview: add support for libcatalyst impl support
2022-10-27new version and rocm fix (#33536)Miroslav Stoyanov1-7/+65
2022-10-27py-ncbi-genome-download: new package (#33511)Luke Diorio-Toth1-0/+21
* py-ncbi-genome-download: new package * fixed style
2022-10-27phist: add v1.11.2 (#33561)Satish Balay1-0/+1
2022-10-27spdlog: allow using vendored fmt library (#33379)Brian Van Essen1-4/+9
2022-10-27chameleon: correct chameleon+simgrid build (#33559)Lucas Nesi1-3/+6
* chameleon: correct chameleon+simgrid build * chameleon: remove unused declarations
2022-10-27ophidia-io-server: new package at v1.7 (#33436)SoniaScard1-0/+39
Co-authored-by: SoniaScard <SoniaScard@users.noreply.github.com>
2022-10-27curl: stop auto generating file named `str` (#33532)psakievich1-1/+1
Calling `determine_variants` from the `curl` package autogenerates an empty file every time it is called.
2022-10-27exago, hiop: propagate build type (#32750)ryandanehy2-3/+37
2022-10-27petsc+kokkos: pass in cuda_arch, rocm_arch to kokkos (#33530)Satish Balay1-3/+14
Also remove dependency on kokkos+wrapper
2022-10-27starpu: correct fxt dependency variant when simgrid (#33558)Lucas Nesi1-0/+1
2022-10-27suite-sparse: add versions up to v5.13.0 (#33550)Massimiliano Culpo1-26/+24
2022-10-27Package slate: added requirements for cuda_arch (#33554)G-Ragghianti1-0/+3
2022-10-27simgrid: add v3.32 (#33557)Lucas Nesi1-0/+1
2022-10-27intel-mpi: add `cpio` as build dependency (#33555)Mosè Giordano1-0/+1
2022-10-27oce: rework recipe to prefer old intel-tbb (#33553)Massimiliano Culpo1-6/+8
2022-10-27hiop: add version 0.7.1 (#33543)Satish Balay1-0/+1
2022-10-27LuaPackage: add missing attribute (#33551)Massimiliano Culpo1-0/+3
fixes #33544
2022-10-27Don't fail over cpuinfo (#33546)Harmen Stoppels16-32/+32
2022-10-27tower-agent and tower-cli: update versions (#33545)Marco De La Pierre2-0/+32
2022-10-27Fix bootstrapping from sources in CI (#33538)Massimiliano Culpo1-6/+6
Since #32262 we are not testing bootstrapping from sources, since we didn't update the mirrors in tests
2022-10-26cppunit: add static/shared variant, add version 1.15_20220904 (#33522)iarspider2-2/+39
2022-10-26opencascade: new version 7.6.3 (#33518)Wouter Deconinck1-0/+5
* opencascade: new version 7.6.3 * opencascade: correct hash for 7.6.3 Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-10-26CLHEP: Add checksum for clhep 2.4.5.4, 2.4.6.0; cleanup recipe (#33521)iarspider1-0/+7
* CLHEP: patching of CMake policy not needed for new-ish versions * Add checksum for clhep 2.4.5.4, 2.4.6.0; cleanup recipe
2022-10-26libcatalyst: add 2.0.0-rc3 release (#33322)Ben Boeckel1-0/+3
2022-10-26Windows: fix bootstrap and package install failure (#32942)百地 希留耶5-1/+52
* Add patches for building clingo with MSVC * Help python find clingo DLL * If an executable is located in "C:\Program Files", Executable was running into issues with the extra space. This quotes the exe to ensure that it is treated as a single value. Signed-off-by: Kiruya Momochi <65301509+KiruyaMomochi@users.noreply.github.com>
2022-10-26slepc: fix for slepc+cuda ^petsc+kokkos+cuda ^kokkos+cuda+wrapper (#33529)Satish Balay1-1/+9
kokkos wrappers modify mpicxx - breaking slepc build.
2022-10-26new version (#33537)Miroslav Stoyanov1-1/+2
2022-10-26gitlab ci: show build machine info (#33523)Harmen Stoppels17-0/+49
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