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2017-10-30r-ggally: new package (#6036)Yifan Zhu1-0/+47
* r-ggally: created new package * r-ggally: version modified
2017-10-30r-speedglm: Create new package. (#6035)lingnanyuan1-0/+39
2017-10-30r-alpine: Create new package. (#6037)lingnanyuan1-0/+50
2017-10-30r-ensembldb: created new package (#6038)Yifan Zhu1-0/+62
2017-10-30r-pcamethods: created new package (#6041)Yifan Zhu1-0/+48
2017-10-30r-proxy: created new package (#6039)Yifan Zhu1-0/+36
2017-10-30r-backports: Create new package. (#6040)lingnanyuan1-0/+42
2017-10-30r-biovizbase: Create new package. (#6042)lingnanyuan1-0/+58
2017-10-30ecp-proxy-apps: release number changed to 1.0 (#6049)Abhinav Bhatele1-12/+12
2017-10-30Auto install available pre-built packages from binary cache (#5242)scheibelp5-30/+62
* basic functionality to install spec from a binary cache when it's available; this spiders each cache for each package and could likely be more efficient by caching the results of the first check * add spec to db after installing from binary cache * cache (in memory) spec listings retrieved from binary caches * print a warning vs. failing when no mirrors are configured to retrieve pre-built Spack packages * make automatic retrieval of pre-built spack packages from mirrors optional * no code was using the links stored in the dictionary returned by get_specs, so this simplifies the logic to return only a set of specs * print package prefix after installing from binary cache * provide more information to user on install progress
2017-10-30comd: update the git repo (#6027)Abhinav Bhatele1-2/+2
git repo has moved from exmatex to ECP-copa
2017-10-29Add bowtie2@2.3.0, fix dependencies and sbangs (#5834)George Hartzell2-3/+44
* Add bowtie2@2.3.0, fix dependencies and sbangs Add support for bowtie2@2.3.0 - digest - a patch for 2.3.0 that parallels the existing package. Truth be told it builds (for me) without this, but I'm assuming that they're there for a reason...). - tune up dependencies - need tbb - don't need readline or zlib Several things were installed with sbang's that use `/usr/bin/env` to fine perl or python. Fix the dependency and clean up the sbang lines. * Fix python exe name, avoid path banging I'd cut and pasted the python bit from the perl bit and missed one reference to perl. While I'm there, use the cleaner `spec['perl'].command` instead of banging together the path from its bits. * Fix up the "when" constraints on the dependencies Get the edge cases right. - 2.2.5 doesn't need tbb, 2.3.[01] do. - 2.3.1 needs readline and zlib.
2017-10-29add updated 2017 versions of Intel packages (#5957)Denis Davydov4-0/+8
2017-10-29Changed from setting C compiler to setting C++ compiler (#6011)mmwolf1-2/+2
2017-10-29dealii: remove bzip2 dependency for newer versions (#6022)Denis Davydov1-5/+10
2017-10-28r-iranges: changed url to git and added versioned dependency on r (#5971)Yifan Zhu1-2/+3
2017-10-28r-geomorph and other r fixes (#5961)Audrey Thoma3-0/+53
2017-10-28r-e1071: Add list_url. (#5986)lingnanyuan1-0/+1
2017-10-28likwid: Update checksum (#6007)Michael Kuhn1-1/+1
2017-10-28r-organismdbi: new package (#5997)Yifan Zhu1-0/+50
2017-10-28r-aldex2: Create new package. (#6015)lingnanyuan1-0/+51
2017-10-28legion: add v17.10.0 (#6019)Christoph Junghans1-0/+2
2017-10-28fixing abyss (#5973)Audrey Thoma1-1/+4
2017-10-27Bugfix: from_list_url(). (#5780)Sergey Kosukhin3-1/+65
This fixes a bug in from_list_url where it was referring to a method which no longer exists. This also adds a test for the from_list_url function.
2017-10-27libaec: add v1.0.2 and generic url (#6017)Christoph Junghans1-3/+4
2017-10-27Byobu: new package (#5974)Matthias Diener1-0/+37
2017-10-27ecp-proxy-apps: add more package (#6003)Christoph Junghans1-1/+3
2017-10-27SWFFT: initial commit (#5953)Christoph Junghans1-0/+48
* SWFFT: initial commit * swfft: fix build target * swfft: add v1.0 * Update package.py
2017-10-27comd: add v1.1 (#5994)Christoph Junghans1-6/+6
* comd: add v1.1 * Update package.py * remove serial variant, now ~mpi * Update package.py
2017-10-27r-graph: Create new package. (#5958)lingnanyuan1-0/+37
2017-10-27r-category: Create new package. (#5959)lingnanyuan1-0/+46
2017-10-27r-methodss3: Create new package. (#5960)lingnanyuan1-0/+43
2017-10-27r-oo: Create new package. (#5962)lingnanyuan1-0/+43
2017-10-27r-utils: Create new package. (#5964)lingnanyuan1-0/+38
2017-10-27r-pfam-db: Create new package. (#5965)lingnanyuan1-0/+38
2017-10-27r-oligoclasses: Create new package. (#5966)lingnanyuan1-0/+50
2017-10-27r-interactivedisplaybase: created new package (#5967)Yifan Zhu1-0/+41
2017-10-27r-annotationforge: Create new package. (#5968)lingnanyuan1-0/+46
2017-10-27r-gostats: Create new package. (#5969)lingnanyuan1-0/+46
2017-10-27r-mcmcglmm: new package (#5970)Audrey Thoma2-0/+77
2017-10-27r-annotationhub: created new package (#5972)Yifan Zhu1-0/+51
2017-10-27gnuplot: add 5.2.0 and 5.0.7 (#5979)Denis Davydov1-0/+2
2017-10-27r-deseq2: Create new package. (#5981)lingnanyuan1-0/+53
2017-10-27r-agdex: Create new package. (#5983)lingnanyuan1-0/+39
2017-10-27r-agilp: Create new package. (#5984)lingnanyuan1-0/+36
2017-10-27r-aims: Create new package. (#5987)lingnanyuan1-0/+42
2017-10-27Add info for go@1.9.2 (#5989)George Hartzell1-0/+1
The go team released 1.9.2 which includes fixes for some things that 1.9.1 broke: > ... include fixes to the compiler, linker, runtime, documentation, go command, and the crypto/x509, database/sql, log, and net/smtp packages. They include a fix to a bug introduced in Go 1.9.1 and Go 1.8.4 that broke "go get" of non-Git repositories under certain conditions.
2017-10-27r-annotationfilter: created new package (#5995)Yifan Zhu1-0/+42
2017-10-27r-protgenerics: created new package (#5998)Yifan Zhu1-0/+37
2017-10-26ecp-proxy-apps: add dependencies (#5999)Abhinav Bhatele1-1/+6