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2023-07-18added new packages (#38941)Andrey Perestoronin16-0/+96
2023-07-18Update gsi-ncdiag/1.1.1 sha256 (#38943)David Huber1-1/+1
2023-07-17py-soupsieve: add 2.4.1 (#38929)Manuela Kuhn1-3/+5
2023-07-17py-setuptools: add 68.0.0 (#38930)Manuela Kuhn1-0/+5
* py-setuptools: add 68.0.0 * [@spackbot] updating style on behalf of manuelakuhn
2023-07-17py-setuptools-rust: add 1.6.0 (#38932)Manuela Kuhn1-3/+6
2023-07-17py-sphinxcontrib-applehelp: add 1.0.4 (#38933)Manuela Kuhn1-1/+3
2023-07-17py-sphinxcontrib-htmlhelp: add 2.0.1 (#38934)Manuela Kuhn1-2/+4
2023-07-17Decompression: fix naming issues (#37749)Dan Lipsa2-35/+76
* When using system tools to unpack a .gz file, the input file needs a different name than the output file. Normally, we generate this new name by stripping off the .gz extension off of the file name. This was not sufficient if the file name did not have an extension, so we temporarily rename the file in that case. * When using system tar utility to untar on Windows, we were (erroneously) skipping the actual untar step if the filename was lacking a .tar extension * For foo.txz, we were not changing the extension of the decompressed file (i.e. we would decompress foo.txz to foo.txz). This did not cause any problems, but is confusing, so has been updated such that the output filename reflects its decompressed state (i.e. foo.tar). * Added test for strip_compression_extension * Update test_native_unpacking to test each archive type with and without an extension as part of the file name (i.e. we test "foo.tar.gz", but also make sure we decompress properly if it is named "foo").
2023-07-17Fix wrong StageComposite keep override (#38938)Harmen Stoppels2-2/+38
`Stage(keep=True)` was ignored when put in a composite that doesn't override the value.
2023-07-17py-pyside: fix build with python3.8 (#38886)Manuela Kuhn1-18/+10
* py-pyside: fix build for version 1.2.2 * Remove check for python version * Fix style * Remove unnecessary patch * Update var/spack/repos/builtin/packages/py-pyside/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pyside/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Remove py-markupsafe conflict * Update var/spack/repos/builtin/packages/py-pyside/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pyside/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Move python check removal below suprocess patch * Remove preference of 1.2.2 --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-17soapdenovo2: strip optimization flags from injected flags (#38846)snehring1-5/+10
* soapdenovo2: strip optimization flags from injected flags * soapdenovo2: add maintainer * soapdenovo2: only append on cflags * soapdenovo2: clean up some wording and implementation
2023-07-17justbuild: add v1.1.3 (#38925)Alberto Sartori1-0/+1
2023-07-17Fix python import tests (#38928)Manuela Kuhn1-1/+1
Running `spack test run <python package>` resulted in the error ``` 'str' object is not callable ``` because the python executable was not set correctly.
2023-07-17vecgeom: new version 1.2.4 (#38940)Seth R. Johnson1-0/+1
2023-07-17libxc: add kxc and lxc variants (#38937)Ashwin Kumar Karnad1-0/+6
* libxc: add kxc and lxc variants * libxc: add kxc and lxc variants for @5:0: * Apply suggestion from @tldahlgren --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-07-17Enable http/2 support by default in curl (#38750)Harmen Stoppels1-1/+1
2023-07-17librsvg: add 2.56.2 and rust upper version limit for 2.51 (#38766)Manuela Kuhn1-7/+22
* librsvg: add rust upper version limit * librsvg: Add 2.56.2
2023-07-17qt-base: fix build on macos, when +network (#38519)Martin Aumüller1-5/+18
* qt-base: always link to GSS framework on macOS On macos, the code in src/network/kernel/qauthenticator.cpp unconditionally includes the header from the GSS framework, so we should link against it. This applies two patches from the dev branch. They are to be cherry-picked into the 6.5 (probably released with 6.5.2) and 6.6 branches, but they apply against 6.3.2 as well. * qt-base: disable libproxy on macOS src/network/CMakeLists.txt disables it on MACOS anyway. And as it is not found without pkg-config, building with +network would break because of the feature being explicitly enabled. * qt-base: don't depend on pkgconfig on macOS On macOS, usage of pkg-config is disabled by unsetting PKG_CONFIG_EXECUTABLE, unless the feature pkg-config is requested explicitly. * qt-base: don't depend on at-spi2-core on macOS Does not build on macOS and seems to be targeted at linux. Qt6 on homebrew does not depend on it, either. * qt-base: fix long lines * qt-base: restrict use of pkgconfig to linux yes, probably not needed on windows, either Co-authored-by: Alec Scott <alec@bcs.sh> * qt-base: disable libproxy on Windows as well according to src/network/CMakeLists.txt it's only used on Unix * qt-base: improvements based on reviewer suggestions --------- Co-authored-by: Alec Scott <alec@bcs.sh>
2023-07-17legion: Add 23.06.0, variants for UCX, max nodes, update CUDA version. (#38759)Elliott Slaughter1-8/+29
* legion: Add 23.06.0, variants for UCX, max nodes, update CUDA version. * legion: Make newer CUDA versions dependent on newer Legion. * legion: Update CUDA arch list so that we can stop tracking manually.
2023-07-17HiPACE++ 23.07 (#38862)Maxence Thévenet1-2/+12
* Update package and fix compilation issues * fix order
2023-07-17Added py-eprosima-fastdds package (#38877)Daniele Cesarini1-0/+29
* Added py-eprosima-fastdds package * Fixed python extension and dependency version * Added build type for swig * Added minimum cmake support * Added py-test dependency * Added suggestion on python extension Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Added suggestion on build type for cmake Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-17Lock, database and store don't need global configuration on construction ↵Massimiliano Culpo24-337/+431
(#33495) Lock objects can now be instantiated independently, without being tied to the global configuration. The same is true for database and store objects. The database __init__ method has been simplified to take a single lock configuration object. Some common lock configurations (e.g. NO_LOCK or NO_TIMEOUT) have been named and are provided as globals. The use_store context manager keeps the configuration consistent by pushing and popping an internal scope. It can also be tuned by passing extra data to set up e.g. upstreams or anything else that might be related to the store.
2023-07-17Update new PythonPackage template to prefer --config-settings (#38918)Adam J. Stewart3-17/+12
2023-07-17root: Add package name to all conflict messages (#38920)Aiden Grossman1-9/+13
Not having the package name in the conflict messages can make debugging conflicts exceedingly hard when trying to concretize an environment with a sufficient number of packages. This patch adds the package name to all of the conflict messages so that it is easy to tell just from the message which package is causing conflicts.
2023-07-17Environment/depfile: fix bug with Git hash versions (attempt #2) (#37560)Peter Scheibel2-12/+91
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-07-17Minimal cleanup of a few tests in `test/packaging.py` (#38880)Massimiliano Culpo1-162/+125
* Minimal cleanup of a few tests in packaging.py * Use f-strings
2023-07-15py-jinja2: add conflict for py-markupsafe@2.0.2 (#38913)Manuela Kuhn1-0/+3
* py-jinja2: add conflict for py-markupsafe@2.0.2 * Update var/spack/repos/builtin/packages/py-jinja2/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-15py-shiboken: fix build by restricting dependencies (#38900)Manuela Kuhn1-2/+5
* py-shiboken: fix build by restricting dependencies * Update var/spack/repos/builtin/packages/py-shiboken/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Remove conflict * Remove py-markupsafe conflict * Update var/spack/repos/builtin/packages/py-shiboken/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-15py-furo: add new package (#38904)Manuela Kuhn3-0/+66
2023-07-15py-sphinx-rtd-theme: add 1.2.2 and py-sphinxcontrib-jquery: add 4.1 (#38896)Manuela Kuhn2-7/+12
2023-07-14py-cupy: Add 11.3.0, 11.4.0, 11.5.0, 11.6.0, 12.0.0, 12.1.0 (#38911)Elliott Slaughter1-4/+14
* py-cupy: Add 11.3.0, 11.4.0, 11.5.0, 11.6.0, 12.0.0, 12.1.0. * Clean up version bounds.
2023-07-14add a phist patch to avoid trying to compile SSE code if that is not … ↵Jonas Thies2-0/+350
(#38806) * add a phist patch to avoid trying to compile SSE code if that is not available. * phist: make the avoid-sse patch more robust because compiler on ARM system still tried to compile SSE code
2023-07-14spiner: update dependencies (#37367)Richard Berger1-5/+4
* spiner: update dependencies * spiner: add v1.6.1 and updated dependency
2023-07-14legion package: use conditional variants for gasnet (#38902)Massimiliano Culpo1-37/+17
2023-07-14lmdb: add 0.9.31 (#38892)Michael Kuhn1-0/+1
2023-07-14podio: add 0.16.6 tag and mark older releases as deprecated (#38891)Thomas Madlener1-5/+26
* podio: Add latest tag * podio: Deprecate older versions
2023-07-14new release and bug fix on check() (#38901)G-Ragghianti2-4/+11
2023-07-14GDAL: add v3.7.1 (#38884)Adam J. Stewart1-0/+1
2023-07-14Remove unused context manager (#38897)Harmen Stoppels1-8/+0
2023-07-14adios2: add catalyst variant (#38852)Vicente Bolea1-0/+8
2023-07-14ci: remove aws-ahug (#38777)Harmen Stoppels4-530/+0
2023-07-14build(deps): bump actions/setup-python from 4.6.1 to 4.7.0 (#38887)dependabot[bot]5-11/+11
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.6.1 to 4.7.0. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/bd6b4b6205c4dbad673328db7b31b7fab9e241c0...61a6322f88396a6271a6ee3565807d608ecaddd1) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-07-14py-protobuf: add 4.23.3 (#38614)Manuela Kuhn3-2/+8
* py-protobuf: add 4.23.3 * protobuf: add 3.23.3 * py-protobuf: disable cpp variant for @4.22:
2023-07-14py-simplejson: add 3.19.1 (#38898)Manuela Kuhn1-1/+1
2023-07-14py-lightly: add v1.4.12 (#38883)Adam J. Stewart1-0/+1
2023-07-14Use sirius namespacing for cmake (#38707)Taillefumier Mathieu1-23/+31
* Use sirius namespacing for cmake * Formating * Fix lapack variables
2023-07-14xrootd: new versions 5.6.0, 5.6.1 (#38844)Wouter Deconinck1-2/+6
2023-07-14Fix issue on cray with super call (#38895)Rocco Meli1-1/+1
2023-07-14disable superlu test (#38894)Harmen Stoppels1-15/+0
2023-07-13Bugfix/spack spec: read and use the environment concretizer:unification ↵Tamara Dahlgren2-4/+62
option (#38248) * Bugfix: spack.yaml concretizer:unify needs to be read and used * Optional: add environment test to ensure configuration scheme is used * Activate environment in unit tests A more proper solution would be to keep an environment instance configuration as an attribute, but that is a bigger refactor * Delay evaluation of Environment.unify * Slightly simplify unit tests --------- Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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