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2016-12-17build fixes for openblas (#2601)Gregory Lee1-0/+5
* build fixes for openblas * avx2 in openblas nnot supported with older gcc * merge fix for openblas
2016-12-17dealii: fix config for Netcdf with lib64 (#2616)Denis Davydov1-2/+13
2016-12-16graphviz: fixed build error due to specifying ltdl lib but not include. (#2609)Chris MacMackin1-2/+2
* graphviz: fixed build error due to specifying ltdl lib but not include. * graphviz: Fixed dependencies on libtool and expat.
2016-12-16libmesh: added mpi variant (#2584)Andrey Prokopenko1-1/+15
2016-12-16init nfft 3.3.2 package file (#2612)Thierry1-0/+60
* init nfft 3.3.2 package file * shorten comment line
2016-12-16py-beautifulsoup4: Added version 4.5.1 (#2610)Chris MacMackin1-0/+3
2016-12-16Updating Trilinos with superlu variant and fixing git branch version ↵Jon Rood1-1/+25
options. (#2604)
2016-12-16[HACK] Make concretization great again! (#2590)Adam J. Stewart16-16/+16
* Always default to +mpi * Always default to ~X
2016-12-15openblas: derives from MakefilePackage (#2488)Massimiliano Culpo3-57/+71
* MakefilePackage: changed build_args and install_args for consistency with #2464 openblas: derives from MakefilePackage * MakefilePackage: changed default edit behavior
2016-12-15go: see #2567, temporary fix (#2588)Massimiliano Culpo1-2/+8
2016-12-15Add GNU patch to Spack. (#2598)Todd Gamblin1-0/+37
2016-12-14Fix target for compiler on CNL operating systems (#2580)Mario Melara2-2/+2
Changes any to a string to avoid <built-in function any> being incorrectly added to target in compilers.yaml.
2016-12-14Blacklist flex 2.6.2 by commenting out package version (#2571)Jean-Paul Pelteret1-2/+4
Fixes #2554
2016-12-14Make unzip quiet (#2593)Adam J. Stewart2-1/+2
2016-12-14Update texlive digest (#2591)George Hartzell1-1/+1
Texlive is *live*, they update the contents of their tarball on a whim. Here's the current one.
2016-12-13New package py-cdo (#2569)Kim Serradell1-0/+47
* Add python cdo support * Correct pypi url * Corrected a blanck space that was failing CI * Corrected url that was failing CI * Following @alalazo indications, Write this line wrapping it around 80 chars to pass Travis * Added cdo package depency
2016-12-13Change attribute to match ArchSpec refactor (#2579)Mario Melara1-1/+1
Fixes issue #2578
2016-12-13Merge pull request #2506 from skosukhin/pr_pythonGregory Lee1-29/+134
A couple of updates for python package.
2016-12-13Better cxx11/14/17 flags for GNU/Clang/Intel (#2539)Ben Morgan4-2/+67
* Better cxx11/14 flags for GNU/Clang/Intel - GCC 4.8 only supports -std=c++1y for C++14 - Use CMake's rules for AppleClang to set cxx11 and cxx14 flags based on Apple Xcode/LLVM version - Use CMake's rules for Intel to add support for cxx14 flags based on Intel version. * Add cxx17_flag property Implement property in compiler for c++17 as per those for c++11/14. Add concrete support for GNU/Clang: - Return -std=c++1z for GCC 5 and above per GCC documentation - Return -std=c++1z for Clang 3.5 and above per Clang documentation - Return -std=c++1z for Apple LLVM 6.1 and above per CMake's rules
2016-12-13Added support for xSDKTrilinos package (#2201)amklinv1-0/+100
* Added support for xSDKTrilinos package * Updated xsdktrilinos/package.py for PR review * Added trilinos version # reqs to xsdktrilinos * xsdktrilinos now uses CMakePackage * Cleaned up xsdktrilinos/package.py * Removed unused cxxflags from xsdktrilinos * Removed unused sys import from xsdktrilinos
2016-12-13Update `spack setup` and `spack graph` to be consistent with recent ↵Elizabeth Fischer2-2/+4
refactoring (#2317) * Update `spack setup` and `spack graph` to be consistent with c557e765 and 9347f869. Fixes #2316. * Added another "fix" necessary to make `spack setup` work. * Added another "fix" necessary to make `spack setup` work. (reverted from commit 7f0d3ecb38c97ec00491d7cd66b4266e3018b1ca)
2016-12-13likwid: remote root from INSTALL_CHOWN (#2564)Denis Davydov1-3/+3
2016-12-13slepc/petsc: fix python dependency (#2560)Denis Davydov2-3/+5
2016-12-13Add a test to ensure package names have the right case. (#2562)Todd Gamblin4-5/+109
2016-12-13Updated python: refactoring and warning messages.Sergey Kosukhin1-36/+57
2016-12-13Updated python: pass LDSHARED to dependants' setup scripts.Sergey Kosukhin1-0/+88
2016-12-13Updated python: account for lib64 when filtering compilers.Sergey Kosukhin1-20/+16
2016-12-13Updated python: reformat code.Sergey Kosukhin1-10/+10
2016-12-12Add missing bzip2 dependency to freetype (#2536)Adam J. Stewart3-25/+23
* Add freetype dependency on bzip2 * Switch package with an install method for the docs
2016-12-12Doxygen: Add new version (#2561)Jean-Paul Pelteret1-0/+1
2016-12-12Set parent process's input stream inside the build process. (#2535)Sergey Kosukhin1-0/+13
2016-12-12p4est: remove unneded lua dependency (#2559)Denis Davydov1-1/+0
2016-12-12Add documentation for repositories and namespaces. (#2474)Todd Gamblin8-17/+476
* Add documentation for repositories and namespaces. * Update and extend repository documentation per review. - Also add `-N` argument for `spack spec`
2016-12-11New package - r-xgboost (#2493)Javier1-0/+54
2016-12-11atlas: fix lapack stage path (#2371)Denis Davydov1-5/+6
* atlas: fix lapack stage path * atlas: add a few links to other package managers
2016-12-11rename: add new package (#2486)Denis Davydov1-0/+45
2016-12-11[docs] missin .. code-block:: console in Spack 101 (#2530)Stephen McDowell1-0/+2
The advanced [Uninstalling Packages](spack.readthedocs.io/en/latest/tutorial_sc16_spack_basics.html#uninstalling-packages) via hash has a couple missing `.. code-block:: console` directives ;) I have no idea what branch to direct this to though...
2016-12-11likwid: add todo (#2531)Denis Davydov1-1/+9
* likwid: add todo * liwkid: add a note on hwloc dependency
2016-12-11numdiff: fix dependency type on macOS (#2538)Denis Davydov1-8/+2
2016-12-11Updated cmor: corrected way to set constraints for the extendee. (#2543)Sergey Kosukhin1-1/+2
2016-12-11Update Adol-C package (#2556)Jean-Paul Pelteret2-2/+3
Rename developer version, add new version, and make patch version specific.
2016-12-10clang: do xcode mockup iff requested by a package (#2544)Denis Davydov5-5/+15
* clang: do xcode mockup iff requested by a package * add a note * add pkg to setup_custom_environment() and decide whether or not to use mockup XCode there based on the package
2016-12-10Eigen 3.3.1 is latest stable version. (#2551)Stephen McDowell1-0/+1
Main page states [3.3.1 is latest stable](http://eigen.tuxfamily.org/index.php?title=Main_Page).
2016-12-10Scotch 6.0.4 is available. (#2552)Stephen McDowell1-0/+1
Source project page states [6.0.4 is latest stable](http://scotch.gforge.inria.fr/)
2016-12-10Implementation of spack file for Pflotran (#2444)Barry Smith2-1/+50
Supports installing both a "known version" of PETSc/PFlotran that works and the develop/master branches of both packages Funded-by: IDEAS Project: IDEAS/xSDK Time: 4 hour
2016-12-09update flux dependencies and package (#2541)Tom Scogland8-40/+90
* update flux dependencies and package * refinements from @adamjstewart * fix flux document generation The docbook-xsl package has been added, and correctly configures catalog files to generate documentation correctly with asciidoc.
2016-12-09astyle: do not set user/group when installing on macOS (#2542)Denis Davydov1-0/+5
* astyle: do not set user/group when installing on macOS * astyle: add new version
2016-12-09petsc: explicitly disable X11 (#2533)Denis Davydov1-2/+3
otherwise petsc may pickup libX11 on login nodes during config/build, but libX11 may not be available on computation nodes.
2016-12-08Make targets an attribute of compilers (#2500)becker336-25/+56
* Make targets an attribute of compilers, similar to OS. Allows users to use `spack compiler find` to add compilers for the same platform/os but different targets when spack is installed on a file system mounted on machines with different targets. * Changed get_compilers() method to treat old compilers with no target as target='any' * flake8 changes * Address change requests for comments/code clarity
2016-12-08Json loader now returns str objects instead of unicode. (#2524)Sergey Kosukhin1-2/+22
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