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2021-03-26Revert "gdbm: new version (#22505)" (#22568)Massimiliano Culpo1-6/+5
This reverts commit d56c6299326ee53de6b64a409bb1ca631aeeb7e6.
2021-03-26hdf-eos2: fix build when hdf is built without szip (#21788)Tomoyasu Nojiri1-3/+0
2021-03-26mumps: add v5.3.5. (#22564)Rémi Lacroix1-2/+4
2021-03-26SquashFUSE: add new package, add libfuse detection (#22511)Harmen Stoppels2-0/+58
2021-03-26gdbm: new version (#22505)Robert Mijakovic1-5/+6
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-26openmpi: add another maintainer (#22563)Howard Pritchard1-1/+1
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2021-03-26Make SingleFileScope able to repopulate the cache after clearing it (#22559)Massimiliano Culpo2-16/+47
fixes #22547 SingleFileScope was not able to repopulate its cache before this change. This was affecting the configuration seen by environments using clingo bootstrapped from sources, since the bootstrapping operation involved a few cache invalidation for config files.
2021-03-25New R package memuse (#22494)Desmond Orton1-0/+24
2021-03-25zstr: new package, update lbann dependency (#22309)Brian Van Essen2-0/+32
2021-03-25Libwhich: which for libraries. (#22461)dmageeLANL1-0/+27
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-03-25openssl: new version 1.1.1k (#22545)Andrew W Elble1-11/+12
also deprecates <1.1.1k since they are affected by high severity issues
2021-03-25mercurial: new version (#22539)Robert Mijakovic1-0/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-25libblastrampoline: Add version 3.0.3 (#22529)Mosè Giordano1-0/+1
2021-03-24New R package pinfsc50 (#22493)Desmond Orton1-0/+25
2021-03-25py-dask-glm: Added document build (#22293)a-saitoh-fj1-1/+24
* py-dask-glm: Push again for testing with git. * py-dask-glm: Fixed the pointed out OSS dependency setting to type=build. * py-dask-glm: Set depends_on to type=build in the OSS to be built when building the document. * py-dask-glm: Fix type of depends_on (py-scikit-learn) Co-authored-by: miura <miura@fx7-pg01.cm.cluster>
2021-03-24Llvm 7 intel patch (#22516)Ethan Stam2-0/+53
* llvm@7 add patch for intel * Fix invalid version specifier
2021-03-24mesa: add gcc 10.1.0 conflict (#22514)kurtsansom1-0/+4
2021-03-24Add doc for mirror of env (#22525)Frédéric Simonis1-0/+21
2021-03-24fix issue #18853 build of gdk-pixbuf (#22517)Gregory Lee1-4/+9
* fix issue #22228 build of gdk-pixbuf * Update var/spack/repos/builtin/packages/gdk-pixbuf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-03-24intel-parallel-studio: new version (#22510)Robert Mijakovic1-0/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24openmpi: do not over specify hwloc version dep (#22498)Howard Pritchard1-1/+1
related to #22497 Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2021-03-24go: add v1.16.2 (#22506)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24gromacs: add v2021.1 (#22507)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24hadoop: add v3.3.0, v3.2.2 (#22508)Robert Mijakovic1-0/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24gdb: resolve issue with libintl_gettext (#22478)Robert Mijakovic2-0/+16
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23adding debugedit package. (#22458)Vanessasaurus1-0/+32
This package used to be a part of rpm, but now is being developed separately. It will supposedly be moved to a sourceware branch (it is maintained by redhat) but I do not know if this will happen soon. We need it in order to change locations in binaries that are built in /tmp and then moved elsewhere. I will ping @woodard who might be able to give us an estimate if we should include this development repository or wait for it to be moved elsewhere. Once this is merged, we will want to use the bootstrap approach to install and use the library from spack. Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2021-03-23new package py-pyem (#22425)Desmond Orton1-0/+27
* new package py-pyem * Added patch note and removed homepage * Style fixes * Moved the version above deps * Style fix on line 20
2021-03-23Add stdcxx_libs for PGI and Cray compilers (#22491)Sergey Kosukhin3-0/+12
2021-03-23Grace: new package (#22476)Rémi Lacroix1-0/+54
2021-03-23Allow DataTransferKit to be built with external ArborX package (#22486)Daniel Arndt2-1/+7
2021-03-23Add older versions fo py-msgpack-numpy (#22490)Robert Rosca1-0/+6
2021-03-23bootstrap: account for platform specific configuration scopes (#22489)Massimiliano Culpo1-7/+18
This change accounts for platform specific configuration scopes, like ~/.spack/linux, during bootstrapping. These scopes were previously not accounted for and that was causing issues e.g. when searching for compilers.
2021-03-23OpenFOAM-org: Fix compilation of version 2.4.0. (#22472)Rémi Lacroix2-0/+32
Fix "isnan" errors when compiling version 2.4.0 with recent compilers.
2021-03-23OpenFOAM: Depend on CGAL 4.X. (#22474)Rémi Lacroix1-1/+2
CGAL 5.X is currently not supported.
2021-03-23Initial version of libsakura (#22488)Martin Pokorny2-0/+69
2021-03-23VAPOR: new package (#22477)Rémi Lacroix1-0/+50
2021-03-23cryptsetup: new version (#22470)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23intel: new version, 20.0.4 (#22484)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23Channelflow: Fix the package. (#22483)Rémi Lacroix1-1/+1
A search and replace went wrong in 2264e30d99d8b9fbdec8fa69b594e53d8ced15a1. Thanks to @wadudmiah who reported this issue.
2021-03-23git: new version (#22479)Robert Mijakovic1-0/+15
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23flexiblas: add 3.0.4 (#22485)Michael Kuhn1-0/+1
2021-03-23cuda: add v11.2.2 (#22471)Robert Mijakovic1-0/+4
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23OpenMPI: require ssh run dependency (#22115)Harmen Stoppels5-26/+32
* Bump gdbm * Add libedit 3.1 * Bump OpenSSH to 8.5p1 * Bump lz4 * Add openssh as a runtime dep of openmpi
2021-03-23gmake: add v4.3 (#22480)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23cmake: new version (#22469)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23orthofinder: retrieve sources, overhaul recipes (#22423)Desmond Orton1-8/+26
2021-03-23fujitsu-ssl2: fix to library list and env variables (#22462)takanori-ihara1-5/+10
2021-03-22Oneapi packages: update URLs, environment management, and dependencies (#22202)Robert Cohn14-253/+341
* Replace URL computation in base IntelOneApiPackage class with defining URLs in component packages (this is expected to be simpler for now) * Add component_dir property that all oneAPI component packages must define. This property names a directory that should exist after installation completes (useful for making sure the install was successful) and also defines the search location for the component's environment update script. * Add needed dependencies for components (e.g. intel-oneapi-dnn requires intel-oneapi-tbb). The compilers provided by intel-oneapi-compilers need some components under certain circumstances (e.g. when enabling SYCL support) but these were omitted since the libraries should only be linked when a dependent package requests that feature * Remove individual setup_run_environment implementations and use IntelOneApiPackage superclass method which sources vars.sh (located in a subdirectory of component_dir) * Add documentation for IntelOneApiPackge build system Co-authored-by: Vasily Danilin <vasily.danilin@yandex.ru>
2021-03-22clingo-bootstrap: account for cray platform (#22460)Massimiliano Culpo1-3/+7
2021-03-22Add Kokkos smoke test support (#22071)Jan Ciesko1-3/+52
Co-authored-by: Jan Ciesko (-EXP) <jciesko@sandia.gov> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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