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AgeCommit message (Collapse)AuthorFilesLines
2023-10-04ci: pull E4S images from github instead of dockerhub (#40307)Scott Wittenburg6-21/+21
2023-10-04e4s arm: disable bricks due to target=aarch64 not being respected (#40308)eugeneswalker1-6/+6
2023-10-03ADIOS2: v2.8 is not compatible with HDF5 v1.14: (#40258)kwryankrattiger1-0/+1
2023-10-03ci: Change how job names appear in gitlab (#39963)Scott Wittenburg2-38/+13
2023-10-03fix_qgis_build_with_pysip5 (#39941)Sinan1-8/+46
* fix_qgis_build_with_pysip5 * build fails with newer protobuf * somehow findgdal can figure this out. * Update var/spack/repos/builtin/packages/qgis/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * fix gdal lib again * qgis needs QtPositioning provided by qt+location option * fix FindPyQt5 cmake file * fix bug * fix qsci sip issue * fix bug * blackify * improve * add latest LTR * add build dep * revert until bug is fixed * specify proj version for qgis 3.28 * improve gdal libs search via indicating gdal-config * make flake happy * improve deps * add 3.28.11, improve style * fix style * [@spackbot] updating style on behalf of Sinan81 --------- Co-authored-by: Sinan81 <Sinan@world> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2023-10-03falco: new package @1.2.1 (#40289)George Young1-0/+26
* falco: new package @1.2.1 * specifying gmake * Replacing homepage - readthedocs is empty --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-10-03py-tables: add v3.8.0 (#40295)Adam J. Stewart3-12/+69
2023-10-03[add] py-graphene: new recipe, required by py-cylc-flow (#39988)Lydéric Debusschère1-0/+23
2023-10-03Fix binutils regression on +gas~ld fix (#40292)Jordan Galby1-7/+9
2023-10-03e4s ci stacks: sync with e4s-23.08 (#40263)eugeneswalker6-289/+1212
* e4s amd64 gcc ci stack: sync with e4s-23.08 * e4s amd64 oneapi ci stack: sync with e4s-23.08 * e4s ppc64 gcc ci stack: sync with e4s-23.08 * add new ci stack: e4s amd64 gcc w/ external rocm * add new ci stack: e4s arm gcc ci * updates * py-scipy: -fvisibility issue is resolved in 2023.1.0: #39464 * paraview oneapi fails * comment out pkgs that fail to build on power * fix arm stack name * fix cabana +cuda specification * comment out failing spces * visit fails build on arm * comment out slepc arm builds due to make issue * comment out failing dealii arm builds
2023-10-03py-biom-format: Fix package file issues and bring up to date (#39962)Gavin John1-9/+19
* Fix python versioning issue for py-biom-format * Update deps according to feedback * Remove version requirement for py-cython Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Only depend on py-six for versions >=2.1.10 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add py-future as non-dependency for 2.1.15 * There we are. Everything anyone could ever want * Missed cython version change Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-10-03Adding dynaconf module (#39762)GeorgeJuniorGG1-0/+18
* Adding dynaconf module * Fixing style * Adding dependency
2023-10-03py-yarl: add 1.9.2 (#40277)Manuela Kuhn1-4/+4
2023-10-03py-dipy: Update version to support python@3.10 (#40229)Tom Payerle1-0/+6
* py-dipy: Update version to support python@3.10 py-dipy only adds support to python@3.10 in py-dipy@1.5.0 See #40228 * py-dipy: fix formatting issues * py-dipy: another formatting fix * py-dipy: Use depends instead of conflicts * py-dipy: formatting fix * py-dipy: Updating for @1.7.0 Added new minimum version requirements for py-cython py-numpy py-scipy py-h5py as suggested by @manuelakuhn (py-nibabel min version unchanged for @1.7.0)
2023-10-03py-wcwidth: add 0.2.7 (#40256)Manuela Kuhn1-0/+2
2023-10-03py-virtualenv: add 20.24.5 (#40255)Manuela Kuhn4-19/+32
* py-virtualenv: add 20.22.0 * py-platformdirs: add 3.5.3 * py-filelock: add 3.12.4 * py-distlib: add 0.3.7
2023-10-03py-websocket-client: add 1.6.3 (#40274)Manuela Kuhn1-19/+16
2023-10-03py-werkzeug: add 2.3.7 and 3.0.0 (#40275)Manuela Kuhn1-2/+15
2023-10-03py-wrapt: add 1.15.0 (#40276)Manuela Kuhn1-2/+1
2023-10-03py-libEnsemble: add v1.0.0 (#40203)Stephen Hudson1-15/+22
* py-libEnsemble: add v1.0.0 * Add version ranges for deps * Add comments to variants * Put when before type * Fix line lengths * Re-format * Update var/spack/repos/builtin/packages/py-libensemble/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * Update var/spack/repos/builtin/packages/py-libensemble/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> --------- Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-10-03[add] py-graphql-relay: new package (#39807)Lydéric Debusschère2-1/+27
* [add] py-graphql-relay: new package * py-graphql-relay: Update package.py Remove leftovers from version 3.2.0: * archive name in pypi * dependencies * [fix] py-graphql-relay: remove constraint on python version; add dependence py-rx because of ModuleNotFoundError during spack test * [fix] py-graphql-relay: remove py-rx dependence; py-graphql-core: add dependencies for version 2.3.2 * py-graphql-core: Update from review; set build backend, py-poetry for version 3: and py-setuptools for version 2 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-10-03[add] py-metomi-isodatetime: new recipe, required by py-cylc-flow (#39990)Lydéric Debusschère1-0/+19
* [add] py-metomi-isodatetime: new recipe, required by py-cylc-flow * py-metomi-isodatetime: use sources from pypi instead of github
2023-10-03build(deps): bump actions/setup-python from 4.7.0 to 4.7.1 (#40287)dependabot[bot]5-11/+11
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.0 to 4.7.1. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/61a6322f88396a6271a6ee3565807d608ecaddd1...65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-10-03build(deps): bump urllib3 from 2.0.5 to 2.0.6 in /lib/spack/docs (#40286)dependabot[bot]1-1/+1
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.5 to 2.0.6. - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](https://github.com/urllib3/urllib3/compare/v2.0.5...2.0.6) --- updated-dependencies: - dependency-name: urllib3 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-10-03Deactivate Cray sles, due to unavailable runner (#40291)Massimiliano Culpo1-12/+12
This reverts commit 027409120408eb4d41d8bdd82a13c34b3ac7fea9.
2023-10-03Buildcache tarballs with rootfs structure (#39341)Harmen Stoppels2-73/+162
Two changes in this PR: 1. Register absolute paths in tarballs, which makes it easier to use them as container image layers, or rootfs in general, outside of Spack. Spack supports this already on develop. 2. Assemble the tarfile entries "by hand", which has a few advantages: 1. Avoid reading `/etc/passwd`, `/etc/groups`, `/etc/nsswitch.conf` which `tar.add(dir)` does _for each file it adds_ 2. Reduce the number of stat calls per file added by a factor two, compared to `tar.add`, which should help with slow, shared filesystems where these calls are expensive 4. Create normalized `TarInfo` entries from the start, instead of letting Python create them and patching them after the fact 5. Don't recurse into subdirs before processing files, to avoid keeping nested directories opened. (this changes the tar entry order slightly, it's like sorting by `(not is_dir, name)`.
2023-10-02Add AdditiveFOAM package (#39295)Sam Reeve3-0/+68
* Add AdditiveFOAM package * Add AdditiveFOAM build and install Co-authored-by: kjrstory <kjrstory@gmail.com> Co-authored-by: Knapp, Gerry <knappgl@ornl.gov> --------- Co-authored-by: kjrstory <kjrstory@gmail.com> Co-authored-by: Knapp, Gerry <knappgl@ornl.gov>
2023-10-02py-torchgeo: add v0.5.0 (#40267)Adam J. Stewart1-97/+107
* py-torchgeo: add v0.5.0 * Better documentation of dependency quirks
2023-10-02vtk-m@2.0: depend on kokkos@3.7:3.9 per issue #40268 (#40281)eugeneswalker1-0/+1
2023-10-02Add ipm package (#40069)Christoph Weber2-0/+140
2023-10-02Rocm 5.6.0 & 5.6.1 release updates (#39673)renjithravindrankannath53-61/+4047
* 5.6.0 updates * Rocm 5.6.0 updates * Style and audit corrections for 5.6 * Patching smi path for tests. * Style correction * 5.6.1 updates * Updated hip tests for ci build failure Updated hiprand with the release tag Taken care the review comment rocsolver * Adding rocm-smi path for 5.6 * Adding the patch file * Setting library directory uniform * gl depends on mesa but it should not be llvm variant * Fix for the issue 39520 by setting CMAKE_INSTALL_LIBDIR=lib * i1 muls can sometimes happen after SCEV. They resulted in ISel failures because we were missing the patterns for them. * 5.6.0 & 5.6.1 updates for migraphx, miopen-hip, mivisionx * Revert "5.6.0 & 5.6.1 updates for migraphx, miopen-hip, mivisionx" This reverts commit f54c9c6c67a4e5a54859f59d6550eb8e542d6c26. * Revert operator mixup fix * Splitting compiler-rt-linkage-for-host and operator mixup patch * Adding missing patch for reverting operator mixup * 5.6 update for composable-kernel,migraphx,miopen-hip and mivisionx * Updating rvs, rcd and rccl for 5.6.1. adding comment for llvm patch
2023-10-02fix lhapdf package (#37384)Joseph Wang1-0/+9
* fix lhapdf package * [@spackbot] updating style on behalf of joequant --------- Co-authored-by: joequant <joequant@users.noreply.github.com>
2023-10-02Implemented +sycl for slate (#39927)G-Ragghianti4-4/+66
* Implemented +sycl for slate * style * style * add slate +sycl to ci * slate +sycl: explicitly specify +mpi * comment out slate+sycl+mpi in e4s oneapi stack * removing requirement of intel-oneapi-mpi * Added slate+sycl to e4s oneapi stack * Removing obsolete comment --------- Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-10-02libtirpc: Add latest version and allow for builds on macOS (#40189)Thomas Madlener2-4/+124
2023-10-02buildcache: ignore errors of newer buildcache version (#40279)Harmen Stoppels1-2/+2
Currently buildcaches are forward incompatible in an annoying way: spack errors out when trying to use them. With this change, you just get a warning.
2023-10-02py-importlib-metadata: add patch releases (#40249)Harmen Stoppels1-0/+3
importlib_metadata 4.11.4 fixes some nasty issues with `metadata.entry_points(...)`, so ensure we have those bugfixes.
2023-10-02Spack python 3.12: PEP 695 unparse support (#40155)Harmen Stoppels1-0/+28
2023-10-02Cgns fix no fortran config (#40241)Greg Sjaardema1-3/+3
* SEACAS: Update package.py to handle new SEACAS project name The base project name for the SEACAS project has changed from "SEACASProj" to "SEACAS" as of @2022-10-14, so the package needed to be updated to use the new project name when needed. The refactor also changes several: "-DSome_CMAKE_Option:BOOL=ON" to define("Some_CMAKE_Option", True) * CGNS: If fortran not enabled, do not specify parallel fortran compiler * Update package formatting as suggested by black * Accept suggested change
2023-10-02discotec package: add selalib variant (#40222)Freifrau von Bleifrei1-0/+3
2023-10-02zoltan: Fixes for #40198 (#40199)Tom Payerle1-12/+31
Fix issue in configure_args which resulted in duplicate "--with-ldflags" arguments (with different values) being passed to configure. And extended the fix to similar arguments. Also, repeated some flags to "--with-libs" to "--with-ldflags" as when the flags were only in "--with-libs", they did not seem to be picked up everywhere. I suspect this is a bug in the configure script, but adding to both locations seems to solve it and should not have any adverse effects. Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-10-02xv: new package (#40032)Sinan1-0/+29
Co-authored-by: Sinan81 <Sinan@world>
2023-10-02add maintainers to py-nanobind (#40235)Matthew Archer1-1/+1
2023-10-02cabana: add v0.6 (#40168)Sam Reeve1-4/+25
2023-10-02perl-dbd-mysql update to 4.050 (#40245)snehring2-0/+22
* perl-devel-checklib: adding new package perl-devel-checklib * perl-dbd-mysql: adding new version 4.050 and a new build dep
2023-10-02petsc,py-petsc4py,slepc,py-slepc4py: add version 3.20.0 (#40260)Satish Balay4-40/+23
2023-10-02libxkbcommon: new versions 1.4.1, 1.5.0 (#40273)Wouter Deconinck1-0/+5
2023-10-02amrex: add v23.10 (#40270)Weiqun Zhang1-0/+1
2023-10-02assimp: new version 5.3.1 (#40271)Wouter Deconinck1-0/+1
2023-10-02acts: impose cxxstd variant on geant4 dependency (#39767)Wouter Deconinck1-0/+4
2023-10-02rivet: remove deprecated versions and clean up recipe (#39861)Juan Miguel Carceller16-892/+7
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com> Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
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