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* Add BLT package
* Switch install function
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add type='run' to cmake dependency
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add git attribute to BLT
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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(#19522)
* cp2k: locate correct include dir when using intel-parallel-studio+mkl for fftw-api
* libxc: drop arch-specific intel opt. flags
fixes #17794
* libint: drop arch-specific intel opt. flags, always build Fortran example with FC
fixes #17509
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- [x] add a `@pytest.skipif` decorator
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* package/pmdk add variants, version 1.9
* add dependency
* Update var/spack/repos/builtin/packages/pmdk/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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dependency on ccache. (#19510)
Otherwise, phist would look for ccache via cmake, which is not the spack way to do it.
Co-authored-by: Thies <thie_jo@be-cpu03.sc.bs.dlr.de>
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The logic in `config.py` merges lists correctly so that list elements
from higher-precedence config files come first, but the way we merge
`dict` elements reverses the precedence.
Since `mirrors.yaml` relies on `OrderedDict` for precedence, this bug
causes mirrors in lower-precedence config scopes to be checked before
higher-precedence scopes.
We should probably convert `mirrors.yaml` to use a list at some point,
but in the meantie here's a fix for `OrderedDict`.
- [x] ensuring that keys are ordered correctly in `OrderedDict` by
re-inserting keys from the destination `dict` after adding the keys from
the source `dict`.
- [x] also simplify the logic in `merge_yaml` by always reinserting
common keys -- this preserves mark information without all the special
cases, and makes it simpler to preserve insertion order.
Assuming a default spack configuration, if we run this:
```console
$ spack mirror add foo https://bar.com
```
Results before this change:
```console
$ spack config blame mirrors
--- mirrors:
/Users/gamblin2/src/spack/etc/spack/defaults/mirrors.yaml:2 spack-public: https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/
/Users/gamblin2/.spack/mirrors.yaml:2 foo: https://bar.com
```
Results after:
```console
$ spack config blame mirrors
--- mirrors:
/Users/gamblin2/.spack/mirrors.yaml:2 foo: https://bar.com
/Users/gamblin2/src/spack/etc/spack/defaults/mirrors.yaml:2 spack-public: https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/
```
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Shell integration no longer requires setting `SPACK_ROOT`, so we can
simplify the documentation on it. The docs on shell support and using
packages are getting a bit old, and information on `spack load` (which
seems to be everyone's most common way of using packages) is hard to
find.
This PR simplifies the shell documentation to remove SPACK_ROOT, and also
moves some sections around for clearer organization.
- [x] make docs on sourcing setup scripts clearer and simpler
- [x] introduce `spack load` early in the basic usage guide instead of
burying it in the module docs
- [x] clean up module docs so that spack module tcl loads comes later
- [x] be clear about the different ways to use packages so that the users
can find the docs better.
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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Don't require SPACK_ROOT for sourcing setup-env.csh and make output more consistent
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GROMACS still requires a version of FFTW when compiling it to utilize
NVIDIA GPUs. In fact, the type of calculation that depends on FFTW --
Particle-Mesh Ewald (PME) -- is generally run on the host system's CPUs,
even when GPUs are available.
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* New package: py-rise
* Fix URL and add description
* Update var/spack/repos/builtin/packages/py-rise/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
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* New package: py-gsi
* Add dependency on py-setuptools
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* asciidoc-py3: add new version 9.0.3
* asciidoc-py3: fix build
- add libxml2 and libxslt as dependency
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* gaussian-src: initial commit to build from source
* do not install the source to ensure to not accidentally distribute
it to users
* set required runtime env vars based on the login.profile
* gaussian-view: update to 6.1.1
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PR #19482 updated gcc to only apply the zstd patch until @10.2 but the
releases/gcc-10 branch actually does not contain the patch yet, that is,
gcc@10.3 will most likely have the same problem. Apply the patch for all
10.x releases instead.
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* Add new package: acpica-tools
* refine build dependencies
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Co-authored-by: Thomas Green <ca-tgreen@gw4a64fxlogin00.head.gw4.metoffice.gov.uk>
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- [x] Add a patch to fix an implicit declaration error with apple-clang 12
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* gemini dep -py-bcolz +
* Update var/spack/repos/builtin/packages/py-bcolz/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-bcolz/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-bcolz URL fix
* Update var/spack/repos/builtin/packages/py-bcolz/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Update syscalc hash
* Tiny fix
* Change URL and update hash as advised by the devs
Co-authored-by: iarspider <iarpsider@gmail.com>
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* [py-dominate] created template
* [py-dominate] added dependencies
* [py-dominate] added homepage and description. removed fixmes
* [py-dominate] fixed url format
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* Enable packages to use the NVIDIA HPC SDK
* fix linter and review items
* fix linter issue
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
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* [py-torchfile] created template
* [py-torchfile] set python versions
* [py-torchfile] depends on py-numpy
* [py-torchfile] fixed url format
* [py-torchfile] added homepage and description. removed fixmes
* [py-torchfile] fixed url format
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fixes #19476
Module file content is written to file in a
temporary location and read back to be analyzed
by unit tests.
The approach to patch "open" and write to a
StringIO in memory has been abandoned, since
over time other operations insisting on the
filesystem have been added to the module file
generator.
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* [py-pyarrow] telling setup.py that we want cuda support
* [py-pyarrow] added orc variant
* [py-pyarrow] passing the orc variant down the line
* [py-pyarrow] added variant description
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* [arrow] added orc support variant
* [arrow] depends on orc
* [arrow] added explicit disable of features for variants
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(#19459)
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* modified:var/spack/repos/builtin/packages/ppopen-appl-dem-util/package.py
* modified:var/spack/repos/builtin/packages/ppopen-appl-dem-util/package.py:deleted whitespace
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* ocl-icd: fix build problems
* New package: opencl-c-headers
* New package: opencl-clhpp
* New bundled package: opencl-headers
- bundle C and C++ header files
* ocl-icd: Add +headers variant to use this as opencl provider
* ocl-icd: add new upstream release 2.2.13
* ocl-icd: add asciidoc-py3 and xmlto dependency needed for manpage generation
* ocl-icd and opencl-headers provides OpenCL 3.0
- also add more explicit version providing for older ocl-icd versions
* opencl-headers: add maximum of supported opencl versions for all versions
* opencl-headers: there aren't final releases with OpenCL 3.0
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Fix #19465
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* [py-fastrlock] created template
* [py-fastrlock] added dependencies and setting --with-cython
* [py-fastrlock] added homepage and description. removed fixmes
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* Add new package: py-cantoolz
* refine depends
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* [orc] created template
* [orc] depends on maven
* [orc] building with -fPIC
* [orc] fixed name of c flags option
* [orc] depends on openssl
* [orc] added dependencies and disableing installing vendored libs
* [orc] disabling hdfs
* [orc] depending on specific versions of dependencies
* [orc] no building of third party libs
* [orc] helping cmake find the dependencies
* [orc] disabling features that would require static protobuf libraries
* [orc] dependency versions are ranges
* [orc] added homepage and description. removed fixmes
* [orc] flake8
* [orc] switching to compilier indipendent code
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* [treelite] added protobuf variant
* [treelite] adding python support
* [treelite] disable protobuf by default
* [treelite] flake8
* [treelite] reordered phases
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* transrate: new package at 1.0.3
* transrate: add macOS binary distribution
* transrate: fix platform switching
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* py-tomlkit: new package at 0.7.0
* py-tomlkit: add dependencies
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* py-labours
* fix dep version constraints
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* py-or-tools
* python is, of course, a runtime dep
* more dependency fixes, use extends.
* protobuf is >= 3.12.2
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* r-sf: fix build error
* Update var/spack/repos/builtin/packages/r-sf/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Add recipe for qgraf
* Revert "Add recipe for qgraf"
This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd.
* Add herwig3
* Prepare fixes based on MR (needs checking)
* Set all dependencies (except python) as build-type
* OK now
* Move import to the top of the file
* Fix dependency name
Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
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