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2023-09-18grads: add versions and variants (#40017)Brian Vanderwende3-10/+136
* Add grads versions, variants, and dependency * Bugfix for hdf4 libs and style fixes * Switch boolean variant checking syntax
2023-09-18pmix: new versions (#40055)eugeneswalker1-0/+4
2023-09-18xxdiff: add new package (#40021)Brian Vanderwende1-0/+35
* Add new package xxdiff * style fixes * Versioning updates to match best practices * Full hash and flex, bison as build deps
2023-09-18Add cuda as a variant to opa-psm2 (#39754)rfeki1-1/+4
Signed-off-by: Raafat Feki <rfeki@cornelisnetworks.com>
2023-09-18py-tqdm: add 4.66.1 (#39952)Manuela Kuhn1-0/+2
2023-09-18Revert "gitlab ci: temporarily disable darwin aarch64 (#39974)" (#40052)eugeneswalker1-18/+17
This reverts commit 2c13361b09c552427623f9e8a728fad94e3de4e9.
2023-09-18SeLaLib: add new package (#39847)Freifrau von Bleifrei1-0/+72
2023-09-18py-tornado: add 6.3.3 (#39949)Manuela Kuhn1-4/+2
* py-tornado: add 6.3.3 * Fix style
2023-09-18py-twine: add 4.0.2 (#40026)Manuela Kuhn1-2/+3
2023-09-18py-types-psutil: add 5.9.5.16 (#40027)Manuela Kuhn1-0/+1
2023-09-18Fix several build errors for hdf-eos2 (not only but in particular on macOS ↵Dom Heinzeller1-2/+25
w/ apple-clang) (#39877) Fix permissions for configure file in var/spack/repos/builtin/packages/hdf-eos2/package.py, fix dependencies to match what hdf provides, update compiler flags for apple-clang
2023-09-18py-types-typed-ast: add 1.5.8.7 (#40047)Manuela Kuhn1-0/+1
2023-09-18py-types-urllib3: add 1.26.25.14 (#40048)Manuela Kuhn1-1/+3
* py-types-urllib3: add 1.26.25.14 * Fix style
2023-09-18cpat: new package @3.0.4 (#40022)George Young1-0/+24
* cpat: new package @3.0.4 * Update package.py --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-18py-types-python-dateutil: add 2.8.19.14 (#40038)Manuela Kuhn1-1/+1
2023-09-18py-types-requests: add 2.31.0.2 (#40039)Manuela Kuhn1-2/+3
2023-09-18py-types-setuptools: add 68.2.0.0 (#40040)Manuela Kuhn1-0/+1
2023-09-18build(deps): bump docker/login-action from 2.2.0 to 3.0.0 (#39966)dependabot[bot]1-2/+2
Bumps [docker/login-action](https://github.com/docker/login-action) from 2.2.0 to 3.0.0. - [Release notes](https://github.com/docker/login-action/releases) - [Commits](https://github.com/docker/login-action/compare/465a07811f14bebb1938fbed4728c6a1ff8901fc...343f7c4344506bcbf9b4de18042ae17996df046d) --- updated-dependencies: - dependency-name: docker/login-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-18build(deps): bump docker/setup-qemu-action from 2.2.0 to 3.0.0 (#39968)dependabot[bot]1-1/+1
Bumps [docker/setup-qemu-action](https://github.com/docker/setup-qemu-action) from 2.2.0 to 3.0.0. - [Release notes](https://github.com/docker/setup-qemu-action/releases) - [Commits](https://github.com/docker/setup-qemu-action/compare/2b82ce82d56a2a04d2637cd93a637ae1b359c0a7...68827325e0b33c7199eb31dd4e31fbe9023e06e3) --- updated-dependencies: - dependency-name: docker/setup-qemu-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-18build(deps): bump docker/build-push-action from 4.2.1 to 5.0.0 (#39969)dependabot[bot]1-1/+1
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 4.2.1 to 5.0.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](https://github.com/docker/build-push-action/compare/0a97817b6ade9f46837855d676c4cca3a2471fc9...0565240e2d4ab88bba5387d719585280857ece09) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-18py-werkzeug: Add version 0.12.2 required by py-graphene-tornado @2.6.1 (#39984)Lydéric Debusschère1-0/+1
2023-09-18Enabled building GCC 13.1 on darwin/aarch64. (#38667)Ben Cowan1-5/+15
2023-09-18python: Don't prefer 3.10 (#40036)Juan Miguel Carceller5-9/+8
2023-09-18[add] py-ldap3: new recipe, required by py-metomi-rose (#39982)Lydéric Debusschère1-0/+20
2023-09-18py-traits: add 6.4.2 (#39976)Manuela Kuhn1-2/+1
2023-09-18py-trove-classifiers: add 2023.8.7 (#39977)Manuela Kuhn1-0/+1
2023-09-18py-rseqc: add 5.0.1 (#39953)George Young1-2/+4
* py-rseqec: add 5.0.1 * Update package.py * style ... --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-18[chore] py-aniso8601: Add version 7.0.0 (#39808)Lydéric Debusschère1-0/+1
* [chore] py-aniso8601: Add version 3.0.2 required by py-graphene * py-aniso8601: Add version 7.0.0 and constraints on python version * py-aniso8601: fix style * [fix] py-aniso8601: remove version 3.0.2 which depends on removed version of python; set the minimal version of python to 3.7 * py-aniso8601: remove version constraint on python
2023-09-18Nextflow: add 22.04.3 (#40034)Diego Alvarez S1-0/+5
2023-09-18chexmix: new package (#38441)George Young2-0/+52
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-18checksum: use FIXME instead of FIX ME when adding versions (#40050)Michael Kuhn1-1/+1
The former is highlighted by editors, while the latter is not.
2023-09-18coin3d: apply upstream patches to fix build on Centos 8 (#39839)Martin Aumüller1-0/+18
fixes undefined references to dlerror, dlopen, dlsym, dlclose and XDefaultScreenOfDisplay, XScreenNumberOfScreen, XCreatePixmap, XFree, XFreePixmap, XCloseDisplay, XOpenDisplay
2023-09-18Julia: Fix sha256 for some LLVM patches (#40041)Rémi Lacroix1-3/+3
2023-09-15grass: Update spec for gdal dependency (#38396)Joscha Legewie1-1/+2
2023-09-15CI: add spec to job vars (#39905)Caetano Melone1-0/+5
* CI: add details about built spec to ci job variables Co-authored-by: Alec Scott <alec@bcs.sh> Co-authored-by: Alec Scott <hi@alecbcs.com>
2023-09-15gitlab ci: submit the correct audience for protected publish jobs (#40046)Scott Wittenburg1-1/+1
2023-09-15Windows RPATHing: fix symlink error (#39933)John W. Parent2-23/+38
With 349ba83, you cannot symlink() if the link already exists. Update the simulated RPATHing logic on Windows to account for that.
2023-09-15linux-headers: drop rsync dep, add new version (#39867)Harmen Stoppels1-1/+12
2023-09-15update sha256 after new tarball uploads (#40030)David Gardner1-1/+1
2023-09-15Group primitive url/path handling functions together (#40028)Massimiliano Culpo21-888/+903
2023-09-15Sandia OpenSHMEM: Update to include version 1.5.2 (#40025)Jack Morrison1-0/+1
2023-09-15build(deps): bump sphinx from 7.2.5 to 7.2.6 in /lib/spack/docs (#40029)dependabot[bot]1-1/+1
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.5 to 7.2.6. - [Release notes](https://github.com/sphinx-doc/sphinx/releases) - [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst) - [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.5...v7.2.6) --- updated-dependencies: - dependency-name: sphinx dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-14Add shared and pic variants to libxml2 (#38094)Alex Richert1-0/+16
2023-09-14Add Scine QCMaquis recipe to builtin packages (#39709)Adam Grofe1-0/+62
* Add Scine QCMaquis recipe to builtin packages * Format scine-qcmaquis recipe using black * Remove import os from scine-qcmaquis recipe * Reduce length of symmetries line in scine-qcmaquis * Add myself as a maintainer of the scine-qcmaquis recipe * Update Scine-QCMaquis recipe following the review PR URL: https://github.com/spack/spack/pull/39709 Changes: - Updated Symmetries variant to us multi feature - Added dependency to boost+chrono since it was undocumented - Use define_from_variant to setup CMake args - Make version 3.1.2 be preferred since 3.1.3 build is broken * Change build_tests boolean condition --------- Co-authored-by: Adam Grofe <adamgrofe@microsoft.com>
2023-09-14gitlab ci: Put Cray binaries in public mirrors (#39938)Scott Wittenburg3-34/+7
2023-09-14meme: add 5.5.4, correct dependencies (#40014)George Young1-21/+24
* meme: add 5.5.4, correct dependencies * variant renaming --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-14gffread: new package @0.12.7 (#40015)George Young1-0/+23
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-14Set # of ninja procs to 'make_jobs' for scipy (#293) (#38831)Alex Richert1-0/+1
2023-09-14Add pic option & maintainer to lz4 (#38095)Alex Richert1-0/+8
Co-authored-by: Greg Becker <becker33@llnl.gov>
2023-09-14Ensure PythonExtension is consistent when finding externals (#40012)Massimiliano Culpo1-41/+41
PythonExtension is a base class for PythonPackage, and is meant to be used for any package that is a Python extension but is not built using "python_pip". The "update_external_dependency" method in the base class calls another method that is defined in the derived class. Push "get_external_python_for_prefix" up in the hierarchy to make method calls consistent.
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