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2023-07-31qt-base: add conflict for 6.5+ with GCC < 9 (#39158)Martin Aumüller1-0/+3
2023-07-31py-numpy: add v1.25.2 (#39172)Adam J. Stewart1-0/+1
2023-07-31Add `spack checksum --verify`, fix `--add` (#38458)Alec Scott8-117/+272
* Add rewrite of spack checksum to include --verify and better add versions to package.py files * Fix formatting and remove unused import * Update checksum unit-tests to correctly test multiple versions and add to package * Remove references to latest in stage.py * Update bash-completion scripts to fix unit tests failures * Fix docs generation * Remove unused url_dict argument from methods * Reduce chance of redundant remote_versions work * Add print() before tty.die() to increase error readablity * Update version regular expression to allow for multi-line versions * Add a few unit tests to improve test coverage * Update command completion * Add type hints to added functions and fix a few py-lint suggestions * Add @no_type_check to prevent mypy from failing on pkg.versions * Add type hints to format.py and fix unit test * Black format lib/spack/spack/package_base.py * Attempt ignoring type errors * Add optional dict type hint and declare versions in PackageBase * Refactor util/format.py to allow for url_dict as an optional parameter * Directly reference PackageBase class instead of using TypeVar * Fix comment typo --------- Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2023-07-31update py-cupy to enable ROCm builds and add variant to control optional ↵eugeneswalker3-15/+125
dependencies (#38919) * py-cupy updates: add +rocm and +all * rocm deps are link only * set parallelism for both +rocm and +cuda * add missing deps; remove unnecessary deps; uncomment maintainers; get hipcc properly
2023-07-31py-terminado: add 0.17.1 (#39165)Manuela Kuhn1-8/+13
* py-terminado: add 0.17.1 * Fix style * Update var/spack/repos/builtin/packages/py-terminado/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-07-31added new packages (#39166)Andrey Perestoronin1-0/+11
2023-07-31libtiff: 4.5.1 (#39159)Martin Aumüller1-0/+1
2023-07-31libgeotiff: new versions (#39160)Martin Aumüller1-0/+2
2023-07-31py-rdflib: add 6.3.2 (#39065)Manuela Kuhn1-3/+10
* py-rdflib: add 6.3.2 * Update var/spack/repos/builtin/packages/py-rdflib/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Remove python dependency --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-31py-python-hostlist: package addition (#39035)mschouler1-0/+20
* Add recipe for py-hostlist * Fix style * Fix style * Add homepage, fix version url and remove unnecessary dependency * Fix version and remove url * Rename package and fix git link --------- Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
2023-07-31Remove Xcode mock-up (#39020)Adam J. Stewart3-227/+0
* Remove Xcode mock-up * Remove unused imports
2023-07-31fzf: add v0.42.0 (#39150)Alec Scott1-0/+1
2023-07-31py-lightning: add v2.0.6 (#39152)Adam J. Stewart1-1/+3
2023-07-31py-sphinx: add v7.1 (#39151)Adam J. Stewart1-3/+14
2023-07-31libjpeg-turbo: checksum 2.1.5.1 & 3.0.0 (#39157)Martin Aumüller1-0/+2
2023-07-30py-lightly: add v1.4.14 (#39153)Adam J. Stewart1-0/+1
2023-07-30py-chex: add 0.1.5 (#39102)Christopher Christofi1-0/+1
2023-07-30py-csvkit: add 1.1.1 (#39124)Manuela Kuhn1-10/+15
2023-07-30sourmash: new package @4.8.2 (#38571)George Young5-4/+84
* sourmash: new package @4.8.2 * sourmash: new package @4.8.2 * py-bitarray: add 2.7.6, 2.7.4 * Update var/spack/repos/builtin/packages/py-bitstring/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update setuptools dependency * Adding missing deps * Update var/spack/repos/builtin/packages/sourmash/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Correcting maturin dep Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/sourmash/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/sourmash/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/sourmash/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Adding dependency types * Add `@0.14.17` as the last pre-`@1:` release * Switch to use `python_platlib` * Update package.py * Update var/spack/repos/builtin/packages/py-screed/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-30PyPy: add new package (#38999)Adam J. Stewart2-0/+234
* PyPy: add new package * Typo fix Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-07-30py-pytest-html: Add version 3.2.0 (#38989)Jordan Galby1-2/+20
* py-pytest-html: add 3.2.0 * py-pytest-html: Add py-py version requirement See https://github.com/pytest-dev/pytest-html/blob/v3.2.0/setup.py#L16 * py-pytest-html: Add dependencies from setup.py and pyproject.toml * py-pytest-html: Add git url * py-pytest-html: Add conflict with py-pytest@7.2: pending py-pytest-html@4
2023-07-29Bugfix/ltrace: Add missing elf dependency (#39143)Tamara Dahlgren1-0/+2
2023-07-28Adding NVIDIA HPC SDK 23.7 (#39127)Filippo Spiga1-0/+14
2023-07-28HACCKernels git repository has changed URL. Updating. (#39129)dslarm1-2/+2
2023-07-28Adding optional hip test (#34907)afzpatel2-1/+124
* Adding optional hip test * Modifications to run every samples test * Skipping test directories without a Makefile * fix styling and cleaning code * fix styling and changed method of itterating through sample folders * changed to new syntax for standalone tests * Updates for changes in syntax
2023-07-28libffi: add -Wno-error=implicit-function-declaration for clang >= 16 (#38356)Julien Bigot1-1/+5
2023-07-28MOLGW package: fix dependence to threaded MKL (#39028)Fabien Bruneval1-0/+2
* molgw package.py * molgw package.py almost ready * bug fix in molgw package.py * MOLGW v3.2 * black pass * duplicated line eliminated * remove FIXME in the header * add me as a maintainer * fix previous commit * sort the imports in the order spack wants * chop the too-long lines * many fixes - variants before dependences - eliminate useless build and install stages - no openmp with intel-mkl was broken * after blackization * cleaning * Update var/spack/repos/builtin/packages/molgw/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * Update var/spack/repos/builtin/packages/molgw/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * Update var/spack/repos/builtin/packages/molgw/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * Update var/spack/repos/builtin/packages/molgw/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * Update var/spack/repos/builtin/packages/molgw/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * use threaded mkl when openmp is triggered --------- Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-07-28py-distributed: add missing tblib dependency. (#39123)Matthias Wolf1-0/+1
I noticed this as we run a `pip check` on all modules we generate. This dependeny seems to have been around for a long time: https://github.com/dask/distributed/blob/2020.12.0/requirements.txt#L8 https://github.com/dask/distributed/blob/2023.4.1/pyproject.toml#L39 While it does not seem essential, it would be nice to have consistent installations by including the missing dependency.
2023-07-28gcc: add 13.2.0 (#39119)Michael Kuhn1-0/+1
2023-07-27Added support for building with Caliper (#39116)Brian Van Essen1-0/+4
2023-07-27Added the import of the regex package (#39117)Brian Van Essen2-0/+3
2023-07-27tecio: adding new package tecio (#39099)snehring1-0/+59
2023-07-27lm-sensors: respect compiler choice (#38890)Aiden Grossman1-0/+8
Currently lm-sensors defaults to the compiler specified in the Makefile (gcc) rather than the one specified in the spec. This patch appends the CC flag to the make invocation with the spec compiler to fix this behavior.
2023-07-27mochi-margo: added version 0.14.1 (#39110)Matthieu Dorier1-0/+1
2023-07-27Updates to rocm recipes for rocm-5.5.0 and rocm-5.5.1 releases (#37910)Sreenivasa Murthy Kolam58-119/+569
* initial commit for rocm-5.5.0 release * fix the hipsparse build error for 5.5.0 * fix build error for amrex .add hiprand as a dependency * modify the patch for rocprofiler-dev * add hiprand for +rocm build * initial commit for rocm-5.5.1 release * bump up the version for rocm-5.5.1 release. * bump up the version for rocmlir.miopen to use this backend only till 5.5 * add new recipe py-barectf and add it as dependency for rocprofiler-dev * revert the changes for rocprofiler-dev for 5.5.0/1 for now as it depends on hsa-amdaqlprofile.so which is a closed source and no spack recipe is available for now. * add rocm-core as dependency for rocm packages from 5.5.0 onwards * avoid download of the gtest for building unit tests
2023-07-27ROCm packages: remove build type variants (#39089)Aiden Grossman41-272/+0
After #36679, the default build type is Release, so there is no need to explicitly set the build type as a custom variant.
2023-07-26Caliper: Add variorum variant (#39104)David Boehme1-0/+5
2023-07-26esmf: add v8.5.0 (#39100)Gerhard Theurich1-0/+1
2023-07-26Add Caliper v2.10.0 (#39103)David Boehme1-1/+2
2023-07-26Adds AMS package.py (#39083)Konstantinos Parasyris1-0/+148
Co-authored-by: koparasy <parasyris1@llnl.com> Co-authored-by: Loic Pottier <pottier1@llnl.gov>, Tom Stitt <stitt4@llnl.gov>
2023-07-26mruby: added mruby package (#39093)Matthieu Dorier2-0/+139
* mruby: added mruby package * mruby: replaced / with os.path.join * mruby: improving style * mruby: improving style again
2023-07-26Create a package for the redis ai module (#39096)Matt Drozt1-0/+124
2023-07-26Update package.py for new hypre release 2.29.0 (#38537)Rob Falgout2-10/+8
2023-07-26Implement `odgi` package (#39078)Gurkirat Singh1-0/+48
* feature (packages): implement `odgi` package This commit re-implements odgi package (superseded by #38741) * fix (packages): remove redundant `requires()` from odgi package This commit removes redundant use of `requires()` for gcc version in the `odgi` package
2023-07-26ci: Make signing requirement explicit (#38995)Scott Wittenburg5-9/+53
Instead of inferring whether to sign binaries, make it explicit, and fail rebuild jobs early if signing is required but cannot be accomplished.
2023-07-26libelf: fix build with clang16+ (#38915)Aiden Grossman1-0/+7
libelf fails to build with clang16+ due to Wimplicit-int and Wimplicit-function-declarations becoming errors by default. This breaks the configuration stage, so no build takes place. This patch fixes this by passing -Wno-error=implicit-int and -Wno-error=implicit-function-declarations as cflags.
2023-07-26llvm: remove build type comment (#39087)Aiden Grossman1-4/+0
The message is now outdated after https://github.com/spack/spack/pull/36679 which could lead to some confusion.
2023-07-26gcoff: fix build with clang 16+ (#38914)Aiden Grossman1-0/+6
gcoff uses the register keyword in a couple different places which causes errors when building with c++17, which is the default in clang 16. This patch adds the -Wno-register flag to ignore these errors when when building with clang 16.
2023-07-26unzip: fix build with clang16+ (#38899)Aiden Grossman2-3/+52
Clang 16's change to erroring out by default on implicit function declarations and implicit integers causes the build script for unzip to break. Since this project hasn't had a release since 2010, we need to patch it downstream/pass additional flags to get the build to succeed.
2023-07-26hdf: fix build with clang16+ (#38888)Aiden Grossman1-4/+8
With the release of clang 16, clang now treats implicit function declarations and implicit integers as errors rather than warnings, causing the build to fail. This patch adds flags to prevent build failures.
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