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2022-08-19Add messages to assertions in asp.py (#32237)psakievich1-9/+40
Assertions without messages if/when hit create a blank error message for users. This PR adds error messages to all assertions in asp.py even if it seems unlikely they will ever be needed.
2022-08-19xpmem: fix configure with ~kernel-module (#32258)iarspider1-1/+1
2022-08-19e4s oneapi: compiler environment: prepend lib dir to LD_LIBRARY_PATH (#32227)eugeneswalker1-3/+7
2022-08-19Add tracy variant to pika (#32090)Mikael Simberg1-0/+3
2022-08-18e4s: add dealii +cuda (#32159)eugeneswalker1-0/+1
2022-08-18spack.util.package_hash: parametrize unit-tests (#32240)Massimiliano Culpo1-68/+29
* spack.util.package_hash: parametrize unit-tests * Fix comment
2022-08-18e4s %oneapi: add amrex +sycl (#32162)eugeneswalker1-1/+2
2022-08-18hpctoolkit: update git url from github to gitlab (#32252)Mark W. Krentel1-1/+1
2022-08-18kassiopeia: new version 3.8.2 (#32254)Wouter Deconinck1-1/+5
* kassiopeia: new version 3.8.2 There was no version 3.8.1, so here is the diff with 3.8.0: https://github.com/KATRIN-Experiment/Kassiopeia/compare/v3.8.0...v3.8.2 Build system changes: - default `cxxstd` is now 17. * kassiopeia: updated hash * kassiopeia: use spec.satisfies Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-18Sensei v4 (#30432)kwryankrattiger6-36/+145
* Sensei: Refactor package to work with v4.0.0 * Add missing MPI dependency * Patch bug in libsim adapter * Simplify conflicts with when-clauses * Conflict variants that are incompatible (catalyst/libsim/ascent) * Fix paraview version constraints to be more clear * Add version constraints for VTK * Drop unneeded visit restrictions * Specify +vtkm dependency on ParaView's VTKm * +hl is not needed for VTK, and is already specified in the VTK recipe when it is needed * Pass paths for adios2 and ascent packages * ECP-SDK: Enable sensei * CI: Add sensei to the data-vis-sdk pipeline * Sensei: Change VISIT_DIR to work on linux * Fixup: style check * Sensei: Add patch for version detection * CI: revert SDK pipeline in favor of new matrices * Sensei: Formatting fixes
2022-08-18pasta: missing setuptools dep (#32220)snehring1-16/+29
* pasta: missing setuptools dep * pasta: remove extraneous which * pasta: convert to PythonPackage * pasta: specify dendropy version
2022-08-18py-rasterio: add v1.3.1 (#32244)Adam J. Stewart1-0/+1
2022-08-18added qt-creator 5.0.3 (#32241)Gregory Lee1-0/+1
* added qt-creator 5.0.3 * [@spackbot] updating style on behalf of lee218llnl Co-authored-by: lee218llnl <lee218llnl@users.noreply.github.com>
2022-08-18autoconf-archive: fetch patch from github (#32232)Sergey Kosukhin2-32/+8
* autoconf-archive: fetch patch from github * autoconf-archive: do not try to patch libtool
2022-08-18Add patch for MEM_* group for Intel Icelake SP for 5.2.0 and newer (#32235)Thomas Gruber1-0/+5
2022-08-18Remove unused argument in test fixture (#32236)Massimiliano Culpo1-1/+1
The argument is very likely a typo, and was meant to be given to the fixture decorator. Since the value being passed is the default, let's just remove it.
2022-08-18ascent: fix oneapi build (#32239)Robert Cohn2-1/+3
2022-08-18e4s ci stack: add catalyst build (#31993)eugeneswalker1-1/+22
2022-08-18flux-sched: fix oneapi build (#32233)Robert Cohn1-0/+2
2022-08-18spec: fix typo in Spec._finalize_concretization (#32210)Massimiliano Culpo1-1/+1
2022-08-18latex2html: new version V2022.2 (#32089)Olivier Cessenat1-0/+1
2022-08-18CI: move nightly macOS builds from GA to pipelines (#32231)Massimiliano Culpo3-72/+5
Modifications: - [x] Delete the `macOS builds nightly` workflow - [x] Removed shield in README.md - [x] Moved corresponding specs to `e4s-macos`
2022-08-18hiredis: set install_name on macos, ccache: optional hiredis (#32219)Axel Huebl2-2/+15
* hiredis: set install_name on macos * ccache: make hiredis optional Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-08-17Update busco to 5.4.3 (#32221)snehring3-4/+90
* metaeuk: new package * sepp: new package * busco: adding version 5.4.3 * busco: adding maintainers * metauk: more accurate cmake dep * sepp: adding missing dep and accurate python dep * sepp: remove install_tree * sepp: extend python
2022-08-18py-pytorch-lightning: add v1.7.2 (#32226)Adam J. Stewart1-0/+1
2022-08-17mpich: add patch fixing MPI_MIN for unsigned integers (#32188)Sergey Kosukhin1-0/+8
2022-08-17bugfix: use cmake version from dependency (#31739)Tom Scogland10-7/+42
Ensure that build tools with module-level commands in spack use the version built as part of their build graph if one exists. This is now also required for mesa, scons, cmake and ctest, out of graph versions of these tools in path will not be found unless added as an external. This bug appeared because a new version of rocprim needs cmake 3.16, while I have 3.14 in my path I had added an external for cmake 3.20 to the dag, but 3.14 was still used to configure rocprim causing it to fail. As far as I can tell, all the build tools added in build_environment.py had this problem, despite the fact that they should have been resolving these tools by name with a path search and find the one in the dag that way. I'm still investigating why the path searching and Executable logic didn't do it, but this makes three of the build systems much more explicit, and leaves only gmake and ninja as dependencies from out in the system while ensuring the version in the dag is used if there is one. The additional sqlite version is to perturb the hash of python to work around a relocation bug which will be fixed in a subsequent PR.
2022-08-17LLVM: add @15.0.0-rc1 (#31945)牟展佑1-1/+2
2022-08-17rct: update packages (RE, RG, RP, RS, RU) with new versions (#32216)Mikhail Titov5-5/+20
2022-08-17e4s mac ci: try lambda, the new mac studio runner (#32169)eugeneswalker2-7/+9
2022-08-17Add HDF5 version 1.13.2. (#32202)Larry Knox1-2/+1
* Add HDF5 version 1.13.2. Remove HDF5 versions 1.13.0 and 1.13.1. * Correct formatting.
2022-08-17Add riscv-gnu-toolchain package. (#32047)wanlinwang1-0/+66
Create a package for riscv-gnu-toolchain, a cross-compilation tool.
2022-08-17clingo: fix bootstrapping on M1/monterey with command line toolsTodd Gamblin1-1/+6
The Python that comes with XCode command line tools is a bit weird. This fixes two issues that were preventing it from bootstrapping: - [x] CommandLineTools python does not come with a `python-config` executable. If you don't have one of these, CMake's FindPython will, for some reason, assume that you want Python 2, so you need to set `CLINGO_PYTHON_VERSION` to ensure that clingo tells `find_package(Python <VERSION>)` the right thing. - [x] We weren't setting `PYTHONHOME` correctly in Python's `package.py`. We were setting it to the `prefix` from Python `sysconfig`, but `prefix` tells you where the executable lives. CommandLineTools python reports its prefix as /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8 but that doesn't exist. It looks like Apple builds the full python and just copies pieces of it into command line tools. PYTHONHOME is supposed to tell you where the default python library location is. So you have to look at the `base`, which `sysconfig` reports as /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8 On most systems this is probably the same as `prefix`, but not with CommandLineTools, which has its system library in a different place. The second change here was cherry-picked to 0d981a012d before merging and doesn't show up here. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-17python: simplify `libs()` and `headers()` methods in `python/package.py`Adam J. Stewart1-28/+46
- [x] Rework `headers` to search a sequence of directories and to display all searched locations on error, as opposed to handling each directory with a variable - [x] Make `headers` and `libs` do the same type of search and raise the same sort of errors. Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2022-08-17New package: py-bitshuffle (#31876)Jen Herting1-0/+26
* [py-bitshuffle] New package * [py-bitshuffle] compiling against spack hdf5 * [py-bitshuffle] flake8 * [py-bitshuffle] update import ine * [@spackbot] updating style on behalf of qwertos Co-authored-by: James A Zilberman <jazrc@rit.edu> Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-17ncbi-toolkit: adding new version (#32098)snehring1-9/+8
2022-08-17Add omnitrace version 1.4.0 (#32160)Jonathan R. Madsen1-5/+9
* Add version 1.4.0 - override build variant with explicit variant instead of __init__ workaround * Update package.py
2022-08-17fasta-36.3.8h_2020-05-04 (#32180)Mike Renfro1-0/+5
* Adding 36.3.8h_2020-05-04 * [@spackbot] updating style on behalf of mikerenfro Co-authored-by: mikerenfro <mikerenfro@users.noreply.github.com>
2022-08-17rclone: add v1.59.1 (#32011)Erik Schnetter1-0/+1
2022-08-17acts: new versions 19.7.0, 20.0.0 (#32177)Wouter Deconinck1-2/+4
2022-08-17amr-wind: remove propagation of shared and openmp variant to dependencies. ↵Jon Rood1-5/+1
(#32182)
2022-08-17kokkos: set CMAKE_CXX_STANDARD instead of Kokkos_CXX_STANDARD (#31841)eugeneswalker1-1/+1
* kokkos@develop: set CMAKE_CXX_STANDARD instead of Kokkos_CXX_STANDARD * use CMAKE_CXX_STANDARD regardless of kokkos version
2022-08-17Add c++14 support flag for xl compiler (#31826)Peter Scheibel1-0/+8
2022-08-17lerc: add libs property (#31684)Adam J. Stewart1-0/+4
2022-08-17mxnet: prefer stable release (#31821)Adam J. Stewart1-1/+5
2022-08-17amrex: add v22.08 (#31844)Weiqun Zhang1-1/+2
2022-08-17e4s oneapi stack: remove notes for now-fixed builds (#31839)eugeneswalker1-3/+1
2022-08-17arm-forge: add v22.0.4. (#31835)RichardABunt1-0/+9
2022-08-17CI: reduce the amount of tests run in the original concretizer (#32179)Massimiliano Culpo2-3/+4
* CI: reduce the amount of tests run in the original concretizer * Don't test Python 3.6 on the original concretizer
2022-08-16kokkos: fix conflict for deprecated `sycl` namespaceTodd Gamblin1-1/+2
We're seeing errors pop up with older versions of Kokkos and newer versions of `oneapi`, specifically: error: no member named 'ONEAPI' in namespace 'sycl' This hapens because `sycl::ONEAPI` is `sycl::ext::oneapi` since oneapi `2022.0.0`. `kokkos@3.6:` uses the new namespace. A conflict was present for this, but it was too specific -- both to `dpcpp` and to the `2022.0.0` version. - [x] Expand version ranges in `kokkos` conflict - [x] Add conflict for `oneapi` in addition to `dpcpp`
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