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2020-10-22Restrict Python version for Strelka to Python 2. (#19466)dunatotatos1-1/+1
Fix #19465
2020-10-22New Package: py-fastrlock (#19467)Jen Herting1-0/+24
* [py-fastrlock] created template * [py-fastrlock] added dependencies and setting --with-cython * [py-fastrlock] added homepage and description. removed fixmes
2020-10-22hercules (#19434)Andrew W Elble1-0/+22
2020-10-22Add new package: py-cantoolz (#18812)darmac1-0/+26
* Add new package: py-cantoolz * refine depends
2020-10-22New package: orc (#19441)Jen Herting2-0/+242
* [orc] created template * [orc] depends on maven * [orc] building with -fPIC * [orc] fixed name of c flags option * [orc] depends on openssl * [orc] added dependencies and disableing installing vendored libs * [orc] disabling hdfs * [orc] depending on specific versions of dependencies * [orc] no building of third party libs * [orc] helping cmake find the dependencies * [orc] disabling features that would require static protobuf libraries * [orc] dependency versions are ranges * [orc] added homepage and description. removed fixmes * [orc] flake8 * [orc] switching to compilier indipendent code
2020-10-22[treelite] added python and protobuf support (#19444)Jen Herting1-1/+45
* [treelite] added protobuf variant * [treelite] adding python support * [treelite] disable protobuf by default * [treelite] flake8 * [treelite] reordered phases
2020-10-22transrate: new package at 1.0.3 (#19295)Justin S1-0/+24
* transrate: new package at 1.0.3 * transrate: add macOS binary distribution * transrate: fix platform switching
2020-10-22py-tomlkit: new package at 0.7.0 (#19450)Justin S1-0/+22
* py-tomlkit: new package at 0.7.0 * py-tomlkit: add dependencies
2020-10-22New package: py-labours (#19433)Andrew W Elble1-0/+31
* py-labours * fix dep version constraints
2020-10-22py-seriate (#19432)Andrew W Elble1-0/+26
2020-10-22New package: py-or-tools (#19431)Andrew W Elble1-0/+52
* py-or-tools * python is, of course, a runtime dep * more dependency fixes, use extends. * protobuf is >= 3.12.2
2020-10-22r-sf: fix build error (#19386)darmac1-1/+1
* r-sf: fix build error * Update var/spack/repos/builtin/packages/r-sf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-22Add herwig3 (#19406)iarspider1-0/+97
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add herwig3 * Prepare fixes based on MR (needs checking) * Set all dependencies (except python) as build-type * OK now * Move import to the top of the file * Fix dependency name Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-22cbc (#19419)Andrew W Elble1-0/+23
2020-10-22cgl (#19420)Andrew W Elble1-0/+26
2020-10-21New package: py-lifelines (#19429)Andrew W Elble1-0/+33
* py-lifelines * also carry the newer version of lifelines * 0.25.5 needs python >= 3.6
2020-10-21clp (#19418)Andrew W Elble1-1/+6
2020-10-21Add Gosam (#19401)iarspider1-0/+26
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add gosam * Flake-8 * Flake-8 * Delete gosam-1.2.4.patch Remove patch * Remove patch from recipe * Changes from MR Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21tests: increase tolerance of termios tests (#19456)Todd Gamblin1-2/+6
Synchronization on GitHub macOS runners seems to be very slow, and frequently the foreground/background tests fail due to the race this causes. This increases the tolerance for slowness a bit more, to allow up to 4 spurious output lines in the tests. This should hopefully result in no more false negatives on these tests for macOS on GitHub.
2020-10-21Added _poll_lock exception tests (#19446)Tamara Dahlgren1-0/+26
2020-10-21new package: py-tinyarray (#19454)Tom Payerle1-0/+29
2020-10-21New package: py-autograd-gamma (#19426)Andrew W Elble1-0/+18
* py-autograd-gamma * missing dependencies
2020-10-21Add Njet (#19399)iarspider1-0/+23
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add NJet * flake-8 * Flake-8 Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21Add qgraf (#19404)iarspider2-1/+25
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add qgraf * Update package.py Changes from review * Changes from MR * Fix for URLs containing @ symbol Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21osi (#19424)Andrew W Elble1-0/+27
2020-10-21shell support: make `which spack` output intelligible (#19256)Todd Gamblin1-6/+17
Zsh and newer versions of bash have a builtin `which` function that will show you if a command is actually an alias or a function. For functions, the entire function is printed, and our `spack()` function is quite long. Instead of printing out all that, make the `spack()` function a wrapper around `_spack_shell_wrapper()`, and include some no-ops in the definition so that users can see where it was created and where Spack is installed. Here's what the new output looks like in zsh: ```console $ which spack spack () { : this is a shell function from: /Users/gamblin2/src/spack/share/spack/setup-env.sh : the real spack script is here: /Users/gamblin2/src/spack/bin/spack _spack "$@" return $? } ``` Note that `:` is a no-op in Bourne shell; it just discards anything after it on the line. We use it here to embed paths in the function definition (as comments are stripped).
2020-10-21unzip: fix build for XCode 12 on macosx (#19453)Todd Gamblin1-2/+9
- [x] `build_targets` should use `macosx` on macOS, `generic` on other systems - [x] enable `LARGE_FILE_SUPPORT` by default
2020-10-21Add Madgraph 2.8.1 (#19400)iarspider4-47/+5
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Update madgraph to 2.8.1 * Changes from MR * Changes from MR Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21New package: py-fastdtw (#19427)Andrew W Elble1-0/+21
* py-fastdtw * cython is buildtime dep
2020-10-21Lapackpp package update (#19447)G-Ragghianti2-11/+28
* Updated blaspp package * Modified lapackpp for newest release * Formatting * Updates to lapackpp package for new version * Added dependency on cblas * Removed cblas dependency * updated to lapackpp * Added new version for blaspp and lapackpp * Removed debugging output * Converted version matching logic for for loop
2020-10-21py-drmaa: new package at 0.7.9 (#19451)Justin S1-0/+18
2020-10-21py-sqlalchemy-utils: new package at 0.36.8 (#19449)Justin S1-0/+19
2020-10-21py-jsonref: new package at 0.2 (#19448)Justin S1-0/+17
2020-10-21spla: Add version 1.2.1 (#19436)Simon Frasch1-0/+15
2020-10-21Skip malformed spec strings when searching for externals (#19438)Massimiliano Culpo2-12/+17
fixes #19266 fzf search method has also been updated Co-authored-by: Tom Scogland <tom.scogland@gmail.com>
2020-10-21mpich : add python build-only dependency (#19403)Sajid Ali1-0/+5
* mpich: yaksa configure fix modified: var/spack/repos/builtin/packages/mpich/package.py * typo * python is not needed when building from preconfigured tarballs * add maintainers
2020-10-21New package: py-autograd (#19425)Andrew W Elble1-0/+27
* py-autograd * add missing dependencies
2020-10-21Added FFLAGS for apple-clang:11 (#17935)Lígia Diana Amorim1-0/+3
* Added FFLAGS for apple-clang:11 * Added issue # * Update var/spack/repos/builtin/packages/mpich/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21gromacs: fix SIMD argument for ppc64le (#19435)Massimiliano Culpo1-1/+1
fixes #19414
2020-10-21veloc: Add missing openssl dependency (#19437)Chuck Atkins1-0/+1
2020-10-21scipoptsuite (#19430)Andrew W Elble1-0/+30
2020-10-21py-hdbscan (#19428)Andrew W Elble1-0/+31
2020-10-21glog (#19423)Andrew W Elble1-0/+1
2020-10-21gflags (#19422)Andrew W Elble1-0/+1
2020-10-21coinutils (#19421)Andrew W Elble1-0/+19
2020-10-21Update git to 2.29.0 (#19415)albestro1-0/+5
2020-10-21update version to avoid compile error (#19363)darmac1-2/+4
* update version to avoid compile error * Update var/spack/repos/builtin/packages/r-rgdal/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21Provide doxygen@1.8.20. (#19412)Kelly (KT) Thompson1-0/+1
2020-10-21py-cvxopt: refine dependency @1.1.9 and update version to @1.2.5 (#19385)darmac1-1/+3
* refine dependency @1.1.9 and update version to @1.2.5 * refine depends_on() for python
2020-10-21Add FORM (#19397)iarspider1-0/+27
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add FORM * Update package.py Changes from review Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
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