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2022-03-30kallisto: add v0.48.0 (#29689)dlkuehn1-0/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-03-30freebayes: add v1.3.6 (#29692)dlkuehn1-0/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-03-30gcc: add missing dependencies (#29671)Tom Scogland1-0/+9
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-03-30simmetrix-simmodsuite: add opencascade variant and version 16.0-220312 (#29759)Cameron Smith1-0/+39
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-03-30ftxui: add new package (#29724)Matthieu Dorier1-0/+16
2022-03-30py-m2r: constrain py-mistune to version 0.8.1 (#29608)Glenn Johnson1-1/+1
* py-m2r: constrain py-mistune to version 0.8.1 * Remove lower half of py-mistune version constraint
2022-03-30cgns: add maintainer (#29775)Greg Sjaardema1-0/+1
2022-03-30neko: add new package (#28791)Niclas Jansson1-0/+42
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-03-30proj: add v8.2.1, v8.2.0 and v8.1.1 (#29774)Thomas Dickerson1-0/+3
Version 9.0.0 drops Autotools support in favor of CMake and will presumably require larger changes to package.py
2022-03-30Flecsi: updated version semantic (#29780)Robert Pavel1-8/+13
Updated flecsi spackage to better support changes in control variables in post 2.1.0 releases while also making legacy versions clearer as to what is a tagged release and what is a rolling-ish development branch
2022-03-30Add patch to fix compilation of boost with compilers not in path (#29718)Mikael Simberg2-0/+16
Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-03-29r-quantreg: add v5.88 (#29621)Glenn Johnson1-0/+1
2022-03-29py-reportlab: add missing dependency on freetype (#29611)Glenn Johnson1-0/+5
* py-reportlab: add missing dependency on freetype * Add missing dependencies * Update var/spack/repos/builtin/packages/py-reportlab/package.py Use pil virtual. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-03-29Trilinos: add linker flags to improve behavior (#29492)Seth R. Johnson1-3/+12
2022-03-29Support DASK backend in XARRAY. (#29726)Nichols A. Romero1-0/+2
* Support DASK backend in XARRAY. * Create XARRAY parallel variant with correct py-dask dependency.
2022-03-29Update cgns for new release (#29709)MicK71-1/+2
Add CGNS 4.3.0 version
2022-03-29ExaGO: add v1.4.0 and v1.4.1 (#29712)Asher Mancinelli2-29/+85
* ExaGO: Handling of cuda architectures and amdgpu targets changed to effectively handle multiple targets. See #28441. * Add ROCm support to ExaGO and update ROCm support in HiOp * ExaGO+rocm requires HiOp+rocm * Newer versions of CMake may set HIP_CLANG_INCLUDE_PATH incorrectly: add comments to the ExaGO/HiOp packages explaining how to address this problem if it occurs.
2022-03-29cmake: use CMAKE_INSTALL_RPATH_USE_LINK_PATH (#29703)Harmen Stoppels2-31/+80
* cmake: use CMAKE_INSTALL_RPATH_USE_LINK_PATH Spack has a heuristic to add rpaths for packages it knows are required, but it's really a heuristic, and it does not work when the dependencies put their libraries in a different folder than `<prefix>/lib{64,}`. CMake patches binaries after install with the "install rpaths", which by default are provided by Spack and its heuristic through `CMAKE_INSTALL_RPATH`. CMake however knows better what libraries are effectively being linked to, and has an option to include those in the install rpath too, through `CMAKE_INSTALL_RPATH_USE_LINK_PATH`. These two CMake options are complementary, repeated rpaths seem to be filtered, and the "use link path" paths are appended to Spack's heuristic "install rpath". So, it seems like a good idea to enable "use link path" by default, so that: - `dlopen` by library name uses Spack's heuristic search paths - linked libraries in non-standard locations within a prefix get an rpath thanks to CMake. * docs
2022-03-29cgns: add v4.3.0 (#29773)Greg Sjaardema1-0/+1
2022-03-29mochi-margo: add v0.9.8 (#29771)Matthieu Dorier1-0/+1
2022-03-29SUNDIALS: refactor CMake recipe (#29585)Seth R. Johnson1-181/+95
- Use define/define_from_variant - Remove unused "fortran_flags" - Fix CUDA architectures when using multiple (needs semicolon not comma separators) - Add `when=` variant restrictions to simplify logic
2022-03-28cuda: add 11.6.2 (#29756)Carlos Bederián1-0/+4
2022-03-28spack info: make sections optional; add build/stand-alone test information ↵Tamara Dahlgren4-49/+191
(#22097) Add output of build- and install-time tests to info command Enable dependencies, variants, and versions by default (i.e., provide --no* options; add gcc to test_info_fields to increase coverage for c_names->v_names
2022-03-28Convert git-over-ssh package URLs to canonical format (#29754)Thomas Dickerson3-3/+3
Use canonical SSH urls for git-over-ssh package urls. See also: discussion on #29706, #29749, and https://forum.gitlab.com/t/provided-ssh-url-is-in-the-wrong-format/14320
2022-03-28spiner: fix +cuda (#29758)Richard Berger1-2/+2
2022-03-28Add ssh to filter of valid urls (#29749)John W. Parent1-1/+1
2022-03-28e4s ci spack.yaml: add h5bench (#29755)eugeneswalker1-0/+1
2022-03-28New package: spiner (#29719)Richard Berger1-0/+77
* New package: spiner * Update dependencies for spiner package * Update var/spack/repos/builtin/packages/spiner/package.py Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> * Update var/spack/repos/builtin/packages/spiner/package.py Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> * Remove versions that can't be installed and use ports-of-call@1.1.0 Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2022-03-28Removed unneeded conflicts in CudaPackage and RocmPackage (#29699)Massimiliano Culpo2-8/+0
Since the variant is conditional there's no need to add conflicts too.
2022-03-28survey package: add versions 1.0.2/1.0.3; add tls model variant (#29375)Jim Galarowicz1-3/+16
2022-03-28ports-of-call: new version 1.1.0 (#29723)Richard Berger1-2/+2
Version 1.0.0 was uninstallable.
2022-03-28batchedblas: new package (#29028)FJ-NaokiMatsumura2-0/+52
2022-03-28gpi-space: add v22.03 (#29736)Max Zeyen1-0/+1
2022-03-28Adding NVIDIA HPC SDK 22.3 (#29737)Filippo Spiga1-0/+4
Co-authored-by: Filippo Spiga <fspiga@nvidia.com>
2022-03-28julia: add patch reverting llvm rpath changes (#29731)Harmen Stoppels2-0/+35
2022-03-28julia 1.6/1.7: constrain libgit2, libssh2 (#29728)Harmen Stoppels1-4/+8
2022-03-27py-torch: fix to build with fujitsu-ssl2 (#29283)FJ-NaokiMatsumura8-0/+544
* py-torch: fix build with fujitsu-ssl2 * fix to use fujitsu-ssl2 in py-torch v1.5.0 to v1.11.0 * fix to use fujitsu-ssl2 in py-torch v1.2.0 to v1.11.0 * Delete fj-ssl2.patch * renamed the patches * Rename fj-ssl2.1.5.patch to fj-ssl2_1.5.patch * Delete fj-ssl2_1.5.patch
2022-03-27mochi-thallium: new package (#29722)Matthieu Dorier1-0/+60
2022-03-27autotools doc: add missing right quote (#29734)百地 希留耶1-1/+1
2022-03-27h5z-zfp: fix build when ^hdf5+mpi (#29733)David M. Rogers1-3/+9
2022-03-27openmpi: switch to using main (#29725)Howard Pritchard1-8/+8
The Open MPI project has elected to name our development branch - main. Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2022-03-26py-torchvision: adjust jpeg dependency (#29614)Glenn Johnson1-1/+1
2022-03-26llvm: add @14.0.0 (#29732)eugeneswalker1-0/+2
* llvm: add @14.0.0 * llvm@14 provides virtual
2022-03-25r-rsqlite: add v2.2.10 (#29624)Glenn Johnson1-0/+2
2022-03-25[julia] gfortran patch required for 1.7.2 (#29720)Jen Herting1-1/+1
2022-03-25Update rocm recipes for rocm-5.0.0 release (#29269)Sreenivasa Murthy Kolam48-109/+529
* update rocm recipes for ROCm-5.0.0 release * revert address sanitizer changes * fix style errors * update to the rocm recipes for 5.0.2 release * fix review comments inside the rocfft recipe * update the rocfft recipe for sqlite dependency
2022-03-25New package: ports-of-call (#29696)Richard Berger1-0/+35
2022-03-25Use the appropriate function to remove files in the stage directory (#29690)Massimiliano Culpo3-4/+29
We shouldn't be using "remove_linked_tree" to remove the lock file, since that function expects to receive a directory path as an argument. Also, as a further measure to avoid regression, this commit restores the "ignore_errors=True" argument on linux and adds a unit test checking that "remove_linked_tree" doesn't change file permissions as a side effect of a failure to remove.
2022-03-24Sherpa: add several new variants used by CMS (#29338)iarspider2-22/+85
2022-03-24vecgeom: fix install error when ~cuda (#29716)Valentin Volkl1-9/+11
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