summaryrefslogtreecommitdiff
AgeCommit message (Collapse)AuthorFilesLines
2021-12-24conduit: add v0.8.0 release and change def for parmetis var (#28102)Cyrus Harrison2-1/+3
2021-12-24r-hdf5r: use pkg-config to find hdf5 (#27847)Glenn Johnson2-12/+110
* r-hdf5r: use pkg-config to find hdf5 Since hdf5 was switched from autotools to cmake, the hdf5 compiler wrappers can not be used to find and configure hdf5. This PR switches to using pkg-config for configuration. * Add comment about configure patch
2021-12-24ccls: add v0.20210330 (#28111)albestro1-0/+1
2021-12-24quantum-espresso: add v7.0 (#28144)Ye Luo1-0/+6
2021-12-24neovim: add tree-sitter dependency + add v0.6.0 (#28145)albestro1-0/+6
2021-12-24py-fastprogress: new package (#28149)Jen Herting1-0/+20
2021-12-24pythia8: bugfix for pythia8 +fastjet (#28153)Wouter Deconinck1-2/+6
2021-12-24dray: add v0.1.8 and v0.1.7 (#28147)Cyrus Harrison1-0/+2
2021-12-24lordec update and gatb-core (#28119)snehring2-3/+44
* lordec: version update to 0.9 adding gatb-core as dep * gatb-core: adding new package gatb-core
2021-12-24 ParaView: add v5.10.0 (#28121)Vicente Bolea1-2/+2
2021-12-24sundials: add v6.0.0 (#28032)Cody Balos1-2/+41
2021-12-24vasp: add support for aocc (#27950)AMD Toolchain Support1-10/+60
Co-authored-by: mohan babu <mohbabul@amd.com>
2021-12-23npb package: add version 3.4.1 (#28122)kjrstory1-7/+15
* The Class F problem has been added to seven of the benchmarks (BT, SP, LU, CG, MG, FT, and EP). * The Class E problem has been added to the IS benchmark. * In version 3.4.1, 'the number of processes' option does not apply. * MPIFC and FC flags were added.
2021-12-23r-htmltools: fix version 0.5.2 (#28124)Glenn Johnson2-1/+2
The lastest version of r-htmltools needs version 1.1.0 of r-fastmap. This is not specified in the DESCRIPTION file.
2021-12-23New package: py-fastcore (#28148)Jen Herting1-0/+29
* [py-fastcore] created template * [py-fastcore] - added dependencies - added homepage - added description - removed fixmes * [py-fastcore] depends on setuptools
2021-12-23HDF5 package: change 1.10.8/1.13.0 CMake Path (#28103)Axel Huebl1-0/+5
These versions change the install location of CMake files used by dependents, but most dependents don't seem to look in this new location. Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com> Co-authored-by: Chris White <white238@llnl.gov>
2021-12-23amber package: add ambertools21 for @20 (#28064)Jen Herting1-4/+11
* [amber] added 3 more patches for amber20 * [amber] updated dependencies for @20 (cuda, parallel-netcdf)
2021-12-23Merge tag 'v0.17.1' into developMassimiliano Culpo3-1/+28
2021-12-23New subcommand: spack bootstrap status (#28004)Massimiliano Culpo5-1/+206
This command pokes the environment, Python interpreter and bootstrap store to check if dependencies needed by Spack are available. If any are missing, it shows a comprehensible message.
2021-12-23py-pymol: update package, new version 2.5.0 (#28044)Andrew W Elble2-22/+50
* py-pymol: update package, new version 2.5.0 * ensure legacy plugins still load/work
2021-12-23Reduce the unit tests jobs for the original concretizerMassimiliano Culpo1-1/+8
Only test Python 2.7, 3.6 and 3.9
2021-12-23Fix execution of style testsv0.17.1Massimiliano Culpo1-0/+2
2021-12-23Bump version and update CHANGELOG.mdMassimiliano Culpo2-1/+26
2021-12-23locks: allow locks to work under high contention (#27846)Tom Scogland1-3/+6
* locks: allow locks to work under high contention This is a bug found by Harshitha Menon. The `lock=None` line shouldn't be a release but should be ``` return (lock_type, None) ``` to inform the caller it couldn't get the lock type requested without disturbing the existing lock object in the database. There were also a couple of bugs due to taking write locks at the beginning without any checking or release, and not releasing read locks before requeueing. This version no longer gives me read upgrade to write errors, even running 200 instances on one box. * Change lock in check_deps_status to read, release if not installed, not sure why this was ever write, but read definitely is more appropriate here, and the read lock is only held out of the scope if the package is installed. * Release read lock before requeueing to reduce chance of livelock, the timeout that caused the original issue now happens in roughly 3 of 200 workers instead of 199 on average.
2021-12-23Regenerate views when specs already installed (#28113)Harmen Stoppels1-4/+2
With this commit: ``` $ spack env activate --temp $ spack install zlib ==> All of the packages are already installed ==> Updating view at /tmp/spack-faiirgmt/.spack-env/view $ spack install zlib ==> All of the packages are already installed ``` Before this PR: ``` $ spack env activate --temp $ spack install zlib ==> All of the packages are already installed $ spack install zlib ==> All of the packages are already installed ``` No view was generated
2021-12-23py-pandas: fix issue reported by verminMassimiliano Culpo1-1/+1
2021-12-23py-vermin: add latest version 1.3.2 (#28072)Morten Kristensen3-3/+4
* py-vermin: add latest version 1.3.2 * [vermin] Fixed usages of super() without arguments (v3+)
2021-12-23sbang: respect package permissive package permissions for sbang (#25764)Paul Spencer2-12/+96
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-12-23Add setdefault option to tcl module (#14686)victorusu5-19/+79
This commit introduces the command spack module tcl setdefault <package> similar to the one already available for lmod Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-12-23Set backup=False by default in filter_file (#28036)Harmen Stoppels1-1/+1
2021-12-23Fix table formatting (#28037)Harmen Stoppels1-1/+1
2021-12-23Revert "patches: make re-applied patches idempotent (#26784)" (#27625)Harmen Stoppels4-137/+25
This reverts commit c5ca0db27fce5d772dc8a4fcffec3b62bb0bf1f3.
2021-12-23MANPATH needs a trailing ':' to utilize system defaults (#21682)Andrew W Elble3-1/+23
otherwise spack breaks using system man pages by default. Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-12-23Added opensuse/leap:15 to spack containerize (#27837)Christian Goll4-5/+58
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-12-23Provide meaningful message for empty environment installs (#28031)Tamara Dahlgren2-9/+26
* Provide a meaningful failure message for installation of an empty environment * Allow regenerating view per offline discussion
2021-12-23Add option to minimize full debug cores. include warning message about ↵Greg Becker5-22/+74
performance (#27970) Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-12-23upcxx: Update the UPC++ package to 2021.9.0 (#26996)Dan Bonachea1-117/+89
* upcxx: Update the UPC++ package to 2021.9.0 * Add the new release, and a missing older one. * Remove the spack package cruft for supporting the obsolete build system that was present in older versions that are no longer supported. * General cleanups. Support for library versions older than 2020.3.0 is officially retired, for two reasons: 1. Releases prior to 2020.3.0 had a required dependency on Python 2, which is [officially EOL](https://www.python.org/doc/sunset-python-2/) as of Jan 1 2020, and is no longer considered secure. 2. (Most importantly) The UPC++ development team is unable/unwilling to support releases more than two years old. UPC++ provides robust backwards-compatibility to earlier releases of UPC++ v1.0, with very rare well-documented/well-motivated exceptions. Users are strongly encouraged to update to a current version of UPC++. NOTE: Most of the lines changed in this commit are simply re-indentation, and thus might be best reviewed in a diff that ignores whitespace. * upcxx: Detect Cray XC more explicitly This change is necessary to prevent false matches occuring on new Cray Shasta systems, which do not use the aries network but were incorrectly being treated as a Cray XC + aries platform. UPC++ has not yet deployed official native support for Cray Shasta, but this change is sufficient to allow building the portable backends there.
2021-12-23Install dir creation message demoted to "debug" level (#27911)Harmen Stoppels1-2/+1
2021-12-23Improve debug info from concretizer (#27707)Greg Becker2-2/+33
2021-12-23spack audit: fix API calls (#27713)Massimiliano Culpo1-4/+4
This broke in #24858
2021-12-23Handle byte sequences which are not encoded as UTF8 while logging. (#21447)Paul Ferrell1-1/+6
Fix builds which produce a lines with non-UTF8 output while logging The alternative is to read in binary mode, and then decode while ignoring errors.
2021-12-23Use bash in setup_git.sh (#27676)Harmen Stoppels1-1/+1
2021-12-23ci: run style unit tests only if we target develop (#27472)Harmen Stoppels5-12/+28
Some tests assume the base branch is develop, but this branch may not have been checked out.
2021-12-23Turn some verbose messages into debug messages (#27408)Harmen Stoppels1-8/+8
2021-12-23Fix overloaded argparse keys (#27379)Harmen Stoppels6-21/+15
Commands should not reuse option names defined in main.
2021-12-23Fix log-format reporter ignoring install errors (#25961)Jordan Galby3-31/+48
When running `spack install --log-format junit|cdash ...`, install errors were ignored. This made spack continue building dependents of failed install, ignoring `--fail-fast`, and exit 0 at the end.
2021-12-23openmpi fix external find for 0.17 (#27255)Robert Underwood1-1/+1
2021-12-23make --enable-locks actually enable locks (#24675)Dylan Simon1-2/+3
2021-12-23simgrid package: add versions 3.28 and 3.29 (#28118)Vinícius1-0/+4
2021-12-22acts: add v15.1 and record incompatibility (#27942)Hadrien G1-1/+3
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>