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2016-08-04Add package for fastx toolkitGeorge Hartzell1-0/+43
Tools for working with FASTA/FASTQ files.
2016-08-04Add package for libgtextutilsGeorge Hartzell1-0/+43
Gordon's Text utils Library, in support of fastx toolkit.
2016-08-04sbang filtering now works on non-writable files. (#1445)Todd Gamblin2-3/+26
- sbang now changes mode to writable and restores mode if a file is not writable.
2016-08-04Merge pull request #1330 from suraia/fix-ascii-graphbecker333-121/+101
Fix graph command with ASCII output
2016-08-04Merge pull request #1437 from jgalarowicz/update-xercescbecker331-4/+5
Update the version of xerces-c, where the developers remove the old v…
2016-08-04Merge pull request #1438 from jgalarowicz/update-libmonitorbecker331-5/+3
Update libmonitor to use its new github location, it does not exist w…
2016-08-04Merge pull request #1444 from tobbez/fix_indent_spiderbecker331-14/+14
Fix incorrect indentation in spack.util.web._spider
2016-08-04Merge pull request #1443 from davydden/pkg/dealii_pythonbecker331-2/+15
dealii: add optional python bindings
2016-08-04Merge pull request #1431 from hartzell/feature/add-package-for-unisonbecker332-0/+94
Add package for unison (and ocaml)
2016-08-04Fix flake8 issuesTorbjörn Lönnemark1-10/+10
2016-08-04dealii: add optional python bindingsDenis Davydov1-2/+15
2016-08-04Fix incorrect indentationTorbjörn Lönnemark1-5/+5
2016-08-04flake8 fixesMichael Kuhn2-103/+83
2016-08-04Fix tests.Michael Kuhn2-12/+11
2016-08-04Fix graph command with ASCII output.Michael Kuhn2-8/+9
2016-08-03Fix #1429: Remove git dep from gettext; break circular dependency.Todd Gamblin1-4/+0
- It's not really a circular dependency -- git is a run dependency of gettext - We can revert this change when Spack is smart enough to make git a run dependency and build it.
2016-08-03Fix flake8 errors for: Update libmonitor to use its new github location, it ↵Jim Galarowicz1-2/+1
does not exist where the package file now points to.
2016-08-03Fix flake8 errors for Update the version of xerces-c, where the developers ↵Jim Galarowicz1-2/+3
remove the old version, so there is no fallback.
2016-08-03Update libmonitor to use its new github location, it does not exist where ↵Jim Galarowicz1-3/+2
the package file now points to.
2016-08-03Update the version of xerces-c, where the developers remove the old version, ↵Jim Galarowicz1-2/+2
so there is no fallback.
2016-08-03Merge pull request #1433 from JRWynneIII/error_message_fixTodd Gamblin1-1/+1
Fix typo for error message when compiler doesn't exist for arch
2016-08-03Added parens to %'s arguments. Fixes #1432James Riley Wynne III1-1/+1
2016-08-03Flake8 cleanupGeorge Hartzell1-0/+1
2016-08-03Merge pull request #1382 from KineticTheory/gktplus3-depsTodd Gamblin5-9/+64
GTK+3: Provide updates to package dependencies.
2016-08-03Add package for unisonGeorge Hartzell1-0/+50
Add package for unison (the file synchronizer). Needs the ocaml compiler to build.
2016-08-03Add package for ocaml compilerGeorge Hartzell1-0/+43
Installs the ocaml compiler.
2016-08-03Merge pull request #1430 from KineticTheory/cray-cc-recursion-fixTodd Gamblin1-1/+1
Cray: Fix a typo that could cause an infinite recursion when calling env/cc
2016-08-03Cray: Fix a typo that could cause an infinite recursion when calling /env/cc.Kelly (KT) Thompson1-1/+1
fixes #1428
2016-08-03Provide minor updates after code reviewKelly (KT) Thompson1-4/+2
+ Always depend on the gettext package. This simplifies the logic and I no longer need to 'import sys' + Only apply the patch for the older version of glib.
2016-08-03Merge pull request #1378 from LLNL/bugfix/gh-1324-intel-parallel-studiobecker331-1/+32
Bugfix/gh 1324 intel parallel studio
2016-08-03Merge pull request #1156 from adamjstewart/features/py-meepbecker3316-47/+685
Add py-meep package and dependencies Merging to add the gettext support, will submit a separate issue for the LD_LIBRARY_PATH issue with MPI and py-meep
2016-08-03Merge pull request #1361 from ↵becker333-6/+38
epfl-scitas/features/module_token_expansion_in_environment module : token expansion in environment
2016-08-03Merge pull request #1420 from epfl-scitas/packages/plumedbecker331-0/+84
plumed : added package
2016-08-03qa : flake8 issuesalalazo1-5/+7
2016-08-02One more formatting change to make flake8 happy.Kelly (KT) Thompson1-1/+1
2016-08-02Merge pull request #1233 from hartzell/add-nextflowbecker331-0/+42
First cut package for nextflow, has issues
2016-08-02Merge pull request #1236 from davydden/pkg/arpack-ng_blasbecker331-9/+30
arpack-ng: fix blas/lapack libraries
2016-08-02arpack-ng: fix blas/lapack librariesDenis Davydov1-9/+30
2016-08-02Merge pull request #1424 from adamjstewart/features/setup_pybecker331-1/+1
spack create should use setup_py() instead of python()
2016-08-02spack create should use setup_py() instead of python()Adam J. Stewart1-1/+1
2016-08-02Merge pull request #1366 from hartzell/feature/add-package-for-ackbecker331-0/+51
Add package for ack
2016-08-02Merge pull request #1421 from hartzell/feature/add-package-for-texlivebecker331-0/+57
Add package for texlive
2016-08-02Merge pull request #1339 from hartzell/features/add-perlbecker331-0/+75
Add perl package
2016-08-02Merge pull request #1423 from glennpj/fix_urlbecker331-1/+2
Move archive_version setting to if block
2016-08-02Remove accidentally committed cabal-install bitsGeorge Hartzell2-62/+0
2016-08-02Merge pull request #1243 from davydden/pkg/atlas_urlsbecker333-9/+120
atlas: fix urls and shared libs
2016-08-02Move archive_version setting to if blockGlenn Johnson1-1/+2
The archive_version variable should only get set if versions will be checked and that is only if there is a list_url in the package file. For VCS repos setting the variable triggers an error from web.py as it parses the default_fetcher object. This should fix #1422.
2016-08-02Merge pull request #864 from davydden/kdiff3becker332-2/+46
kdiff3: initial version of the package
2016-08-02Merge pull request #1360 from glennpj/pysetuptoolsdepbecker334-3/+10
Add py-setuptools dependencies to packages
2016-08-02Merge pull request #1354 from ↵becker334-5/+114
paulhopkins/bugfix/preferred_variants_do_not_recognise_-variant Bugfix/preferred variants do not recognise -variant