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2020-10-21New package: py-autograd-gamma (#19426)Andrew W Elble1-0/+18
* py-autograd-gamma * missing dependencies
2020-10-21Add Njet (#19399)iarspider1-0/+23
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add NJet * flake-8 * Flake-8 Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21Add qgraf (#19404)iarspider2-1/+25
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add qgraf * Update package.py Changes from review * Changes from MR * Fix for URLs containing @ symbol Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21osi (#19424)Andrew W Elble1-0/+27
2020-10-21shell support: make `which spack` output intelligible (#19256)Todd Gamblin1-6/+17
Zsh and newer versions of bash have a builtin `which` function that will show you if a command is actually an alias or a function. For functions, the entire function is printed, and our `spack()` function is quite long. Instead of printing out all that, make the `spack()` function a wrapper around `_spack_shell_wrapper()`, and include some no-ops in the definition so that users can see where it was created and where Spack is installed. Here's what the new output looks like in zsh: ```console $ which spack spack () { : this is a shell function from: /Users/gamblin2/src/spack/share/spack/setup-env.sh : the real spack script is here: /Users/gamblin2/src/spack/bin/spack _spack "$@" return $? } ``` Note that `:` is a no-op in Bourne shell; it just discards anything after it on the line. We use it here to embed paths in the function definition (as comments are stripped).
2020-10-21unzip: fix build for XCode 12 on macosx (#19453)Todd Gamblin1-2/+9
- [x] `build_targets` should use `macosx` on macOS, `generic` on other systems - [x] enable `LARGE_FILE_SUPPORT` by default
2020-10-21Add Madgraph 2.8.1 (#19400)iarspider4-47/+5
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Update madgraph to 2.8.1 * Changes from MR * Changes from MR Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21New package: py-fastdtw (#19427)Andrew W Elble1-0/+21
* py-fastdtw * cython is buildtime dep
2020-10-21Lapackpp package update (#19447)G-Ragghianti2-11/+28
* Updated blaspp package * Modified lapackpp for newest release * Formatting * Updates to lapackpp package for new version * Added dependency on cblas * Removed cblas dependency * updated to lapackpp * Added new version for blaspp and lapackpp * Removed debugging output * Converted version matching logic for for loop
2020-10-21py-drmaa: new package at 0.7.9 (#19451)Justin S1-0/+18
2020-10-21py-sqlalchemy-utils: new package at 0.36.8 (#19449)Justin S1-0/+19
2020-10-21py-jsonref: new package at 0.2 (#19448)Justin S1-0/+17
2020-10-21spla: Add version 1.2.1 (#19436)Simon Frasch1-0/+15
2020-10-21Skip malformed spec strings when searching for externals (#19438)Massimiliano Culpo2-12/+17
fixes #19266 fzf search method has also been updated Co-authored-by: Tom Scogland <tom.scogland@gmail.com>
2020-10-21mpich : add python build-only dependency (#19403)Sajid Ali1-0/+5
* mpich: yaksa configure fix modified: var/spack/repos/builtin/packages/mpich/package.py * typo * python is not needed when building from preconfigured tarballs * add maintainers
2020-10-21New package: py-autograd (#19425)Andrew W Elble1-0/+27
* py-autograd * add missing dependencies
2020-10-21Added FFLAGS for apple-clang:11 (#17935)Lígia Diana Amorim1-0/+3
* Added FFLAGS for apple-clang:11 * Added issue # * Update var/spack/repos/builtin/packages/mpich/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21gromacs: fix SIMD argument for ppc64le (#19435)Massimiliano Culpo1-1/+1
fixes #19414
2020-10-21veloc: Add missing openssl dependency (#19437)Chuck Atkins1-0/+1
2020-10-21scipoptsuite (#19430)Andrew W Elble1-0/+30
2020-10-21py-hdbscan (#19428)Andrew W Elble1-0/+31
2020-10-21glog (#19423)Andrew W Elble1-0/+1
2020-10-21gflags (#19422)Andrew W Elble1-0/+1
2020-10-21coinutils (#19421)Andrew W Elble1-0/+19
2020-10-21Update git to 2.29.0 (#19415)albestro1-0/+5
2020-10-21update version to avoid compile error (#19363)darmac1-2/+4
* update version to avoid compile error * Update var/spack/repos/builtin/packages/r-rgdal/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21Provide doxygen@1.8.20. (#19412)Kelly (KT) Thompson1-0/+1
2020-10-21py-cvxopt: refine dependency @1.1.9 and update version to @1.2.5 (#19385)darmac1-1/+3
* refine dependency @1.1.9 and update version to @1.2.5 * refine depends_on() for python
2020-10-21Add FORM (#19397)iarspider1-0/+27
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add FORM * Update package.py Changes from review Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21Add QD (#19402)iarspider1-0/+26
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add QD * Update package.py Changes from review Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21Add Allinea to cray-libsci (#19232)Chris Richardson1-0/+4
2020-10-21quantum-espresso: fix build fail @6.6 and add conflicts a64fx. (#19383)Toyohisa Kameyama1-1/+9
* quantum-espresso: fix build fail @6.6 and add conflicts a64fx. * get patch to gitlab. * Add +patch
2020-10-21CMakePackage: added 'ipo' variant (#18374)Omri Mor1-1/+17
+ipo sets CMAKE_INTERPROCEDURAL_OPTIMIZATION=ON The option is not supported for CMake < 3.9
2020-10-21Make url_fetch test independent of locale settings (#19390)Massimiliano Culpo1-1/+1
2020-10-21Change 'any' to wildcard for variants (#19381)Greg Becker7-103/+49
2020-10-20Add new packages: ispc & embree (#19361)Martin Aumüller4-0/+176
* Add new package: ispc * Add new package: embree
2020-10-20Thepeg fix (#19405)iarspider1-0/+2
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Fixes for thepeg Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20mfem: Fix support for SUNDIALS and PETSc features (#19326)Josh Essman1-6/+13
* mfem: specify PETSC_DIR, link correct sundials libraries * fix: only use PETSC_DIR directly for static builds * fix: only use sundials nvecmpiplusx for MFEM 4.2+
2020-10-20tau unwind patch: only patch 2.29, not 2.29.1 (#19409)eugeneswalker1-1/+1
2020-10-20Lhapdf extends python (#19398)iarspider1-0/+2
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * LHAPDF should extend Python to get env variables correct Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20deal.II: Add more conflicts due to symbol clashes between dependencies (#19408)Jean-Paul Pelteret1-1/+10
2020-10-20py-archspec: added new package at v0.1.1 (#19395)Massimiliano Culpo3-11/+30
2020-10-20axel: fix build error (#19387)darmac1-0/+4
2020-10-20mesa: Restrict llvm to < 11 (#19393)Chuck Atkins1-1/+1
2020-10-20refine setuptools version to avoid spec conflict (#19384)darmac1-1/+1
2020-10-20Adding AOCC compiler to SPACK community (#19345)GaneshPrasadMA11-4/+229
* Adding AOCC compiler to SPACK community The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. * Added unit tests for detection and flags for AOCC * Addressed reviewers comments w.r.t version checks and url,checksum related line lengths Co-authored-by: Test User <spack@example.com>
2020-10-20boost: fix building old versions with non-system glib and bzip2 (#19389)ketsubouchi2-0/+35
2020-10-20krims: disable float80 when non x86_64. (#19388)Toyohisa Kameyama2-0/+19
2020-10-20MRCPP: added new versions up to v1.3.5 (#19257)Roberto Di Remigio1-5/+16
Removed all alpha versions too
2020-10-20py-pyqt4: Require older version of PySIP (#19391)Seth R. Johnson1-1/+1
Fixes #19322, thanks sto @Sinan81.
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