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2020-07-29Group tests with similar duration togetherMassimiliano Culpo4-76/+72
Style and documentation tests take just a few minutes to run. Since in Github actions one can't restart a single job but needs to restart an entire workflow, here we group tests with similar duration together.
2020-07-29qt: fix build with ~ssl. (#17767)Matthias Wolf1-1/+1
OpenSSL was pulled from the spec too early, leading to failures when attempting to build with ~ssl.
2020-07-29perl: add missing berkeley-db dependency (#17771)Andrew W Elble1-0/+1
2020-07-29lmod: change variant defaults to match Lmod's defaults (#17770)Massimiliano Culpo1-2/+2
2020-07-28Amrvis: update branch name (#17718)mic841-2/+2
2020-07-28Merge tag 'v0.15.3' into developTodd Gamblin4-5/+22
2020-07-28update CHANGELOG.md for 0.15.3v0.15.3Todd Gamblin1-0/+12
2020-07-28bump version number for 0.15.3Todd Gamblin3-5/+10
2020-07-27bugfix: allow relative view paths (#17721)Greg Becker1-14/+28
Relative paths in views have been broken since #17608 or earlier. - [x] Fix by passing base path of the environment into the `ViewDescriptor`. Relative paths are calculated from this path.
2020-07-27bugfix: allow relative view paths (#17721)Greg Becker1-14/+28
Relative paths in views have been broken since #17608 or earlier. - [x] Fix by passing base path of the environment into the `ViewDescriptor`. Relative paths are calculated from this path.
2020-07-27tutorial: Add boto3 installation to setup script (#17722)Todd Gamblin1-0/+6
2020-07-27tutorial: Add boto3 installation to setup scriptTodd Gamblin1-0/+6
2020-07-27Update darshan package with mpi variant (#17717)Patrick Gartung1-6/+11
* Update darshan package with nompi variant. * Change variant to mpi and default to True
2020-07-27r-adespatial: added new package (#17700)Glenn Johnson6-0/+172
This PR adds the r-adesaptial package and several other new packages as dependencies. - r-adegraphics - r-adephylo - r-phylobase - r-rncl - r-rnexml
2020-07-27r-dss: added new package at v2.36.0 with dependencies (#17661)Glenn Johnson6-1/+93
This PR adds the r-dss package and the r-bsseq package, also new, as a dependency. This includes the latest versions, which required updates to the following dependencies: - r-biocgenerics - r-iranges - r-s4vectors - r-summarizedexperiment Older versions of r-dss and r-bsseq are included as well to ensure compatibility with older versions of the above dependencies.
2020-07-27Relocation of sbang needs to be done when the spack prefix changes even if ↵Patrick Gartung2-4/+17
the install tree has not changed. (#17455)
2020-07-27Relocate rpaths for all binaries, then do text bin replacement if the rpaths ↵Patrick Gartung1-7/+10
still exist after running patchelf/otool (#17418)
2020-07-27qt: fixed build with apple-clang (#17706)Seth R. Johnson1-0/+1
2020-07-27SciPy: added v1.5.2 (#17708)Adam J. Stewart1-1/+2
2020-07-27scons: added support to Fujitsu compilers (#17710)ketsubouchi2-8/+180
2020-07-27acts: added v0.29 (#17712)Hadrien G1-0/+1
2020-07-27openmpi: added lustre variant to openmpi (#17478)Amjad Kotobi2-1/+39
2020-07-27sphinxcontrib-mermaid: new package at v0.4.0 (#17630)Claire Guilbaud1-0/+20
2020-07-27json logger: new package at v0.1.11 (#17628)Claire Guilbaud1-0/+18
2020-07-27pygments pytest: new package at v1.2.0 (#17626)Claire Guilbaud1-0/+17
2020-07-27commonmark: new package at v0.9.0 (#17624)Claire Guilbaud1-0/+19
2020-07-27hieroglyph: new package at v1.0.0 (#17625)Claire Guilbaud1-0/+22
2020-07-27python docs theme: new package at v2020.1 (#17627)Claire Guilbaud1-0/+19
2020-07-27yolk3k: new package at v0.9 (#17635)Claire Guilbaud1-0/+22
2020-07-27sphinxcontrib trio: new package at v1.1.2 (#17631)Claire Guilbaud2-0/+32
2020-07-27sphinx gallery: new package at v0.7.0 (#17633)Claire Guilbaud1-0/+23
2020-07-27add tutorial setup script to share/spack (#17705)Greg Becker1-0/+123
* add tutorial setup script to share/spack * Add check for Ubuntu 18, fix xvda check, fix apt-get errors - now works on t2.micro, t2.small, and m instances - apt-get needs retries around it to work Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2020-07-27add tutorial setup script to share/spack (#17705)Greg Becker1-0/+123
* add tutorial setup script to share/spack * Add check for Ubuntu 18, fix xvda check, fix apt-get errors - now works on t2.micro, t2.small, and m instances - apt-get needs retries around it to work Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2020-07-26bugfix: don't redundantly print ChildErrors (#17709)Todd Gamblin2-5/+12
A bug was introduced in #13100 where ChildErrors would be redundantly printed when raised during a build. We should eventually revisit error handling in builds and figure out what the right separation of responsibilities is for distributed builds, but for now just skip printing. - [x] SpackErrors were designed to be printed by the forked process, not by the parent, so check if they've already been printed. - [x] update tests
2020-07-26bugfix: don't redundantly print ChildErrors (#17709)Todd Gamblin2-5/+12
A bug was introduced in #13100 where ChildErrors would be redundantly printed when raised during a build. We should eventually revisit error handling in builds and figure out what the right separation of responsibilities is for distributed builds, but for now just skip printing. - [x] SpackErrors were designed to be printed by the forked process, not by the parent, so check if they've already been printed. - [x] update tests
2020-07-26[root] Add version 6.22 (#17459)Hadrien G1-9/+11
* Add ROOT v6.22 * Hello xext my old friend...
2020-07-24Rename sas static-analysis-package (#17695)Patrick Gartung1-1/+1
2020-07-24Add Totalview package (#17643)Nicholas Sly1-0/+108
* Add initial totalview package. * Add maintainer and helpful comments/information. Co-authored-by: sly <sly@lanl.gov>
2020-07-24brltty (package): Add dependency on alsa-lib (#17616)t-nojiri1-0/+1
2020-07-24py-gensim (package): add version 3.8.3; update dependency constraints (#17641)Jen Herting1-3/+13
2020-07-24MPICH (package): add optional support for argobots (#17678)Matthieu Dorier1-0/+10
2020-07-24singularity: Add version 3.6.1Christian Tacke1-1/+2
2020-07-24WHIZARD (package): add LCIO dependency, Openloops support (#17658)vvolkl3-9/+107
* WHIZARD: add versions 2.8.4 and 2.8.3 * New package: LCIO * WHIZARD: add optional dependency on LCIO * WHIZARD: add optional dependency on Openloops * WHIZARD: allow building with either hepmc or hepmc3 dependencies * Openloops: set process_lib_dir in configure * Openloops: fix reference to variant
2020-07-24Relax architecture compatibility check (#15972)Dennis Klein2-8/+77
* Relax architecture compatibility check * Add test coverage for the spack.abi module
2020-07-24py-astropy: force re-cythonization of distributed .pyx files (#17567)Andrew W Elble1-0/+9
astropy 3.2.1 fails to build with python 3.8.3 with errors similar to this: astropy/stats/_stats.c:318:11: error: too many arguments to function 'PyCode_New' PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) These are files that are generated by cython, but are included in the tarball. Since there's apparently been an API change to PyCode_New, they will need to be re-cythonized to compile correctly.
2020-07-24py-astropy-healpix: new package (#17568)Andrew W Elble1-0/+21
2020-07-24scorep: add libunwind dependency (#17580)jdomke1-0/+8
2020-07-24spack help --spec: add compiler flags (#17584)Adam J. Stewart1-0/+4
2020-07-24Initialize new_specs in Environment.remove() (#17592)Dmitriy1-0/+1
2020-07-24Ensure that the stubs directory does not end up in the rpath (#17619)Harmen Stoppels1-1/+2
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