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2022-08-20spack list: add --tag flag (#32016)sparkyniner3-1/+22
* modified list.py and added functionality for --tag * Removed long and very long, shifted rest of code above return statement * removed results variable * added import statement at top * added the line accidentally deleted * added line accidentally deleted * changed p.name to p, added line inside if statement * line order switched * [@spackbot] updating style on behalf of sparkyniner * ran update completion command * add tests * Update lib/spack/spack/test/cmd/list.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * [@spackbot] updating style on behalf of sparkyniner * changed argument to mock_packages and moved code under filter by tag * removed bad rebase code and added additional test * [@spackbot] updating style on behalf of sparkyniner * added line removed earlier * added line removed earlier * replaced function * added more recommended changes Co-authored-by: sairaj <sairaj@sairajs-MacBook-Pro.local> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-20py-vermin: add latest version 1.4.2 (#32287)Morten Kristensen1-1/+2
2022-08-20Ascent, Conduit & VTK-h: don't assume I have Fortran (#32285)Axel Huebl3-5/+8
* VTK-h: don't assume I have Fortran Don't assume I have a working Fortran compiler in my toolchain :) * Conduit: Do not Assume Fortran * Ascent: Do not Assume Fortran * fix style
2022-08-20WarpX: Add hints for FindMPI (#31842)kwryankrattiger1-2/+7
This seems to be needed on some cray systems and is safe on normal desktops.
2022-08-20gxsview: new version 2022.05.09 (#32289)Olivier Cessenat1-2/+7
2022-08-20Vis: macOS `llvm-openmp` (#32284)Axel Huebl3-0/+4
Add some OpenMP lib provider for Apple-Clang to the vis packages.
2022-08-20Enable Tensorflow for ROCm. Add ROCm dependencies. (#32248)Sreenivasa Murthy Kolam1-3/+31
* Build Tensorflow using the fork for rocm. Initial commit * re-order the versions * fix style errors * address review comments * add conflicts for rocm version * address review comments * remove rocm variant as its added by ROCmPackage
2022-08-19py-globus-sdk: add new versions; unpin py-cryptography version constraint ↵eugeneswalker1-1/+7
(#32280) * add mothra tests * py-globus-sdk: add new versions; unpin py-cryptography version constraint * Update var/spack/repos/builtin/packages/py-globus-sdk/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-19py-pyjwt: fix py-cryptography version constraints (#32279)eugeneswalker1-2/+2
* py-pyjwt: fix py-cryptography version constraints * Update var/spack/repos/builtin/packages/py-pyjwt/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-19py-setuptools: add v64.0.0 (#32078)Adam J. Stewart2-2/+11
2022-08-19Doc: WarpX SENSEI Work-Around (#32276)Axel Huebl1-0/+2
Follow-up to #31542
2022-08-19netcdf-cxx: Update the download URL (#32275)Rémi Lacroix1-1/+1
2022-08-19py-pygments: add v2.13.0 (#32168)Adam J. Stewart1-1/+3
2022-08-19ForTrilinos: new versions 2.0.1, 2.1.0 (#32265)Seth R. Johnson1-10/+9
* ForTrilinos: new versions 2.0.1, 2.1.0 I also had to update the checksum for the released 2.0.0: see #32000 for the explanation and solution to keep this from happening again. * Soooo stylish
2022-08-19ncurses 6.3 restrict patch (#32271)Harmen Stoppels1-1/+1
2022-08-19pcsclite: add new package (#32129)Olivier Cessenat1-0/+50
2022-08-19e4s %oneapi: add aml +ze (level zero) (#32161)eugeneswalker1-0/+1
2022-08-19py-macholib: add v1.16 (#31967)Seth R. Johnson1-1/+2
* py-macholib: add v1.16 * Update dependencies Even 1.11 requires `altgraph (>=0.15)`. The lastest requires no additional dependencies.
2022-08-19htslib, samtools: add v1.15 and v1.15.1 (#32259)dunatotatos2-0/+7
2022-08-19ghostscript: new version 9.56.1 (#32088)Olivier Cessenat1-0/+1
2022-08-19docs: add a note about an issue being solved on `develop` (#32261)Harmen Stoppels1-1/+7
2022-08-19Add messages to assertions in asp.py (#32237)psakievich1-9/+40
Assertions without messages if/when hit create a blank error message for users. This PR adds error messages to all assertions in asp.py even if it seems unlikely they will ever be needed.
2022-08-19xpmem: fix configure with ~kernel-module (#32258)iarspider1-1/+1
2022-08-19e4s oneapi: compiler environment: prepend lib dir to LD_LIBRARY_PATH (#32227)eugeneswalker1-3/+7
2022-08-19Add tracy variant to pika (#32090)Mikael Simberg1-0/+3
2022-08-18e4s: add dealii +cuda (#32159)eugeneswalker1-0/+1
2022-08-18spack.util.package_hash: parametrize unit-tests (#32240)Massimiliano Culpo1-68/+29
* spack.util.package_hash: parametrize unit-tests * Fix comment
2022-08-18e4s %oneapi: add amrex +sycl (#32162)eugeneswalker1-1/+2
2022-08-18hpctoolkit: update git url from github to gitlab (#32252)Mark W. Krentel1-1/+1
2022-08-18kassiopeia: new version 3.8.2 (#32254)Wouter Deconinck1-1/+5
* kassiopeia: new version 3.8.2 There was no version 3.8.1, so here is the diff with 3.8.0: https://github.com/KATRIN-Experiment/Kassiopeia/compare/v3.8.0...v3.8.2 Build system changes: - default `cxxstd` is now 17. * kassiopeia: updated hash * kassiopeia: use spec.satisfies Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-18Sensei v4 (#30432)kwryankrattiger6-36/+145
* Sensei: Refactor package to work with v4.0.0 * Add missing MPI dependency * Patch bug in libsim adapter * Simplify conflicts with when-clauses * Conflict variants that are incompatible (catalyst/libsim/ascent) * Fix paraview version constraints to be more clear * Add version constraints for VTK * Drop unneeded visit restrictions * Specify +vtkm dependency on ParaView's VTKm * +hl is not needed for VTK, and is already specified in the VTK recipe when it is needed * Pass paths for adios2 and ascent packages * ECP-SDK: Enable sensei * CI: Add sensei to the data-vis-sdk pipeline * Sensei: Change VISIT_DIR to work on linux * Fixup: style check * Sensei: Add patch for version detection * CI: revert SDK pipeline in favor of new matrices * Sensei: Formatting fixes
2022-08-18pasta: missing setuptools dep (#32220)snehring1-16/+29
* pasta: missing setuptools dep * pasta: remove extraneous which * pasta: convert to PythonPackage * pasta: specify dendropy version
2022-08-18py-rasterio: add v1.3.1 (#32244)Adam J. Stewart1-0/+1
2022-08-18added qt-creator 5.0.3 (#32241)Gregory Lee1-0/+1
* added qt-creator 5.0.3 * [@spackbot] updating style on behalf of lee218llnl Co-authored-by: lee218llnl <lee218llnl@users.noreply.github.com>
2022-08-18autoconf-archive: fetch patch from github (#32232)Sergey Kosukhin2-32/+8
* autoconf-archive: fetch patch from github * autoconf-archive: do not try to patch libtool
2022-08-18Add patch for MEM_* group for Intel Icelake SP for 5.2.0 and newer (#32235)Thomas Gruber1-0/+5
2022-08-18Remove unused argument in test fixture (#32236)Massimiliano Culpo1-1/+1
The argument is very likely a typo, and was meant to be given to the fixture decorator. Since the value being passed is the default, let's just remove it.
2022-08-18ascent: fix oneapi build (#32239)Robert Cohn2-1/+3
2022-08-18e4s ci stack: add catalyst build (#31993)eugeneswalker1-1/+22
2022-08-18flux-sched: fix oneapi build (#32233)Robert Cohn1-0/+2
2022-08-18spec: fix typo in Spec._finalize_concretization (#32210)Massimiliano Culpo1-1/+1
2022-08-18latex2html: new version V2022.2 (#32089)Olivier Cessenat1-0/+1
2022-08-18CI: move nightly macOS builds from GA to pipelines (#32231)Massimiliano Culpo3-72/+5
Modifications: - [x] Delete the `macOS builds nightly` workflow - [x] Removed shield in README.md - [x] Moved corresponding specs to `e4s-macos`
2022-08-18hiredis: set install_name on macos, ccache: optional hiredis (#32219)Axel Huebl2-2/+15
* hiredis: set install_name on macos * ccache: make hiredis optional Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-08-17Update busco to 5.4.3 (#32221)snehring3-4/+90
* metaeuk: new package * sepp: new package * busco: adding version 5.4.3 * busco: adding maintainers * metauk: more accurate cmake dep * sepp: adding missing dep and accurate python dep * sepp: remove install_tree * sepp: extend python
2022-08-18py-pytorch-lightning: add v1.7.2 (#32226)Adam J. Stewart1-0/+1
2022-08-17mpich: add patch fixing MPI_MIN for unsigned integers (#32188)Sergey Kosukhin1-0/+8
2022-08-17bugfix: use cmake version from dependency (#31739)Tom Scogland10-7/+42
Ensure that build tools with module-level commands in spack use the version built as part of their build graph if one exists. This is now also required for mesa, scons, cmake and ctest, out of graph versions of these tools in path will not be found unless added as an external. This bug appeared because a new version of rocprim needs cmake 3.16, while I have 3.14 in my path I had added an external for cmake 3.20 to the dag, but 3.14 was still used to configure rocprim causing it to fail. As far as I can tell, all the build tools added in build_environment.py had this problem, despite the fact that they should have been resolving these tools by name with a path search and find the one in the dag that way. I'm still investigating why the path searching and Executable logic didn't do it, but this makes three of the build systems much more explicit, and leaves only gmake and ninja as dependencies from out in the system while ensuring the version in the dag is used if there is one. The additional sqlite version is to perturb the hash of python to work around a relocation bug which will be fixed in a subsequent PR.
2022-08-17LLVM: add @15.0.0-rc1 (#31945)牟展佑1-1/+2
2022-08-17rct: update packages (RE, RG, RP, RS, RU) with new versions (#32216)Mikhail Titov5-5/+20
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