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2023-09-27e4s cray sles: suspend ci until machine issues resolved (#40219)eugeneswalker1-12/+12
2023-09-26vtk: @9.2 need seacas@2022-10-14, fix macos (#39896)Martin Aumüller1-2/+23
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2023-09-26Paraview package: update freetype find patch for shared libs (#40085)John W. Parent1-2/+5
VTK's (and therefore Paraview's) FindFreetype module required patching to handle static import libraries from Freetype. However it did not cover shared libraries. This adds support for importing shared freetype into the VTK build
2023-09-26spack --profile: dump to stderr (#40209)Harmen Stoppels1-1/+1
2023-09-26ploticus: new package (#39881)Christoph Weber1-0/+41
Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2023-09-26Add NCCL v2.18.5-1 release to recipe (#40201)Matt Fraser1-1/+2
2023-09-26crosstool-ng: add v1.26.0 (#40204)Massimiliano Culpo1-0/+1
2023-09-26libressl: fix package & new versions (#39741)Martin Aumüller1-4/+5
2023-09-26Always apply Python unixcompilers.py `rpath` fix, not just on cray (#39929)Dom Heinzeller2-2/+2
* Rename var/spack/repos/builtin/packages/python/cray-rpath-3.1.patch as var/spack/repos/builtin/packages/python/rpath-non-gcc.patch and apply unconditionally * Update var/spack/repos/builtin/packages/python/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-26opencv: add 4.7.0 and 4.8.0 and fix ffmpeg dependency (#39013)Martin Aumüller1-2/+8
2023-09-26seacas: correctly limit fmt dependency (#39756)Martin Aumüller1-1/+1
versions older than 2022-10-14 do not build with fmt@10, either: fmt/core.h:1579:3: error: static_assert failed due to requirement 'formattable'
2023-09-26hypre: add support for magma (#40121)Victor A. P. Magri1-10/+25
2023-09-26bcl2fastq2: patch for compiling on aarch64 (#40195)snehring2-0/+13
2023-09-26gmap-gsnap: add v2023-07-20 and aarch64 support (#40200)snehring1-2/+11
2023-09-25Elbencho: add elbencho package (#40193)Ethan Williams1-0/+71
* add elbencho package * pep8 compliant * add description * depends on boost * boost options * dependencies * fix ncurses not linking properly missing tinfo * pep8 fix * fix style of boost variants * final style fix - spack style is happy * correct cufile env variable name --------- Co-authored-by: Ethan W <mail@ethanwilliams.xyz>
2023-09-25apex: add new version 2.6.3 + deal with ompt build problem (#40073)Alberto Invernizzi1-0/+4
* add new version 2.6.3 * add conflict for openmp when using gcc
2023-09-25openssl: new versions (#40194)Harmen Stoppels1-2/+17
apparently there was still a 1.1.1 release
2023-09-25omegah: new version (#40192)Cameron Smith1-0/+5
2023-09-25spdlog: add version 1.12.0 (#40186)Matthieu Dorier1-0/+1
2023-09-25subread: removing mtune arg to compiler (#40197)snehring1-6/+6
2023-09-25new package: gsibec (#40137)eugeneswalker2-0/+70
2023-09-25py-numcodecs: drop upperbound, add new version, avoid native compilation ↵Harmen Stoppels2-4/+22
(#40183) * py-numcodecs: drop upperbound, add new version, avoid native compilation * py-numcodecs: add entrypoints * Remove another upperbound on python Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-25jsoncpp: add meson build system, update package, update cmake ~ownlibs (#39639)Harmen Stoppels2-23/+30
2023-09-25openssh: add version 9.4p1 and fix compile issue with new zlib-1.3 (#40174)Bernhard Kaindl1-0/+9
The fix for the compile issue was improved by Bernhard Kaindl. He also added to fix two classes of other build fails: - add missing openssl dependency version limit to older openssh versions - add missing -fcommon for new compilers building old openssh versions Co-authored-by: snehring <snehring@iastate.edu>
2023-09-25phist: remove python 3.10 upperbound (#40175)Harmen Stoppels1-2/+3
2023-09-25Add opendjk 11.0.20.1+1, 17.0.8.1+1 (#40035)Diego Alvarez S1-0/+36
2023-09-25namd: Add NAMD 3.0b3 and ARM support (#40134)Rocco Meli1-3/+18
2023-09-24build(deps): bump black in /.github/workflows/style (#40165)dependabot[bot]1-1/+1
Bumps [black](https://github.com/psf/black) from 23.1.0 to 23.9.1. - [Release notes](https://github.com/psf/black/releases) - [Changelog](https://github.com/psf/black/blob/main/CHANGES.md) - [Commits](https://github.com/psf/black/compare/23.1.0...23.9.1) --- updated-dependencies: - dependency-name: black dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-24new package: ecmwf-atlas (#40136)eugeneswalker11-4/+458
2023-09-24build(deps): bump urllib3 from 2.0.4 to 2.0.5 in /lib/spack/docs (#40119)dependabot[bot]1-1/+1
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.4 to 2.0.5. - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](https://github.com/urllib3/urllib3/compare/2.0.4...v2.0.5) --- updated-dependencies: - dependency-name: urllib3 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-24blast-plus: add 2.14.1 (#40179)George Young1-0/+1
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-24visit: Add NetCDF format support (#40065)Brian Vanderwende1-0/+19
2023-09-24EZTrace: add v2.1 (#39748)François Trahay1-2/+21
2023-09-24garfieldpp: Fix the signature of setup_dependent_build_environment (#40133)Thomas Madlener1-1/+1
2023-09-24sw4: add v3.0 (#40146)Houjun Tang1-2/+2
2023-09-24hmmer: adding new version 3.4 (#40148)snehring1-1/+4
2023-09-24py-torchvision: minimize dependencies (#40163)Adam J. Stewart1-51/+67
2023-09-24py-torchmetrics: add v1.2.0 (#40164)Adam J. Stewart1-4/+3
2023-09-24flecsi: bumping HPX requirement to V1.9.1 (#32355)Hartmut Kaiser1-1/+1
2023-09-24build(deps): bump mypy from 1.5.0 to 1.5.1 in /.github/workflows/style (#40166)dependabot[bot]1-1/+1
Bumps [mypy](https://github.com/python/mypy) from 1.5.0 to 1.5.1. - [Commits](https://github.com/python/mypy/compare/v1.5.0...v1.5.1) --- updated-dependencies: - dependency-name: mypy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-24build(deps): bump actions/checkout from 4.0.0 to 4.1.0 (#40172)dependabot[bot]8-26/+26
Bumps [actions/checkout](https://github.com/actions/checkout) from 4.0.0 to 4.1.0. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/3df4ab11eba7bda6032a0b82a6bb43b11571feac...8ade135a41bc03ea155e62e844d188df1ea18608) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-24bfs: add v3.0.2 (#40176)Alec Scott1-0/+1
2023-09-24glab: add v1.33.0 (#40177)Alec Scott1-0/+1
2023-09-24hugo: add v0.118.2 (#40178)Alec Scott1-0/+1
2023-09-24Add mda-xdrlib and update pyedr and panedr (#39912)Rocco Meli3-2/+24
* ensure umpire~cuda~rocm when ~cuda~rocm * Add mda-xdrlib and update pyedr and panedr * Update var/spack/repos/builtin/packages/py-mda-xdrlib/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * code review * fix python pin, conflated with py-tomli --------- Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-09-24trilinos +shylu: patch to resolve trilinos issue #12048 (#40169)eugeneswalker3-1/+13
* trilinos +shylu: patch to resolve trilinos issue #12048 * e4s ci: build xyce ^trilinos+shylu --------- Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2023-09-23protobuf: add v4.24.3 (#40152)Adam J. Stewart3-10/+12
2023-09-23py-tinyarray: add version 1.2.4, needed for python@3.10 (#40171)Tom Payerle1-0/+4
* py-tinyarray: add version 1.2.4, needed for python@3.10 Added @1.2.4 Require @1.2.4 when using python@3.10: * py-tinyarray: format fix
2023-09-22pumi: add version 2.2.8 (#40143)Cameron Smith1-0/+3
2023-09-22Pin the version of tools used in CI, have dependabot manage their version ↵Massimiliano Culpo3-7/+20
(#40066)
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