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2019-11-11verify.py: os.path.exists exception handling (#13656)Daryl W. Grunau1-14/+16
2019-11-11SIRIUS: add new version, add magma support (#13680)Simon Pintarelli1-7/+30
- depends on spfft starting from 6.4.0 - add magma variant - avoid setting cuda_arch to none - add python dependencies - use release as default build type
2019-11-11added lcov package (#13687)sknigh1-0/+21
2019-11-11Add HPE MPT package (#13616)Adrian Jackson1-0/+77
* Adding in HMPT package for HPE MPI libraries * Updating copyright dates * Renaming HPE MPI package * Fixing error in package file * Tidying up defintions and linting * liniting * Adding in library setup so packages that want to manually add mpi libraries can do so (i.e. npb) * Linting * Linting * Investigating old API errors * Investigating api errors * Investigating api errors * Investigating api errors * Investigating api errors * Investigating api errors: adding back in functions to see when the build fails * Investigating api errors: adding back in functions to see when the build fails * Investigating api errors: adding back in functions to see when the build fails * Investigating api errors: adding back in functions to see when the build fails * Investigating api errors: adding back in functions to see when the build fails * Linting * Linting * Fixing * Fixing
2019-11-11cuDNN: add new versions (#13668)Adam J. Stewart1-33/+171
* cuDNN: add new versions * cuDNN 9.0 can build against CUDA 9.1 * Undo version format change
2019-11-11Add new version of Intel MKL-DNN (#13669)Adam J. Stewart2-10/+34
* Add new version of Intel MKL-DNN * Get OpenMP build working * lomp is also needed for linking * http -> https * Add myself as maintainer
2019-11-11py-scikit-learn: update OpenMP flag (#13683)Adam J. Stewart1-1/+1
2019-11-11new CDO release 1.9.8 (#13674)Brian Spilner1-0/+1
2019-11-11Update ButterflyPACK and STRUMPACK (#13661)Pieter Ghysels2-5/+20
* Add new strumpack version (3.2.0), with new dependency on ButterflyPACK. * add ButterflyPACK version 1.1.0 * Add strumpack version 3.3.0, add dependency on ButterflyPACK 1.1.0 * Sort ButterflyPACk versions from newest to oldest * Add a shared variant for STRUMPACK * Also allow possible newer versions of ButterflyPACK
2019-11-11pmdk: fix x86_64 arch check (#13676)Phil Carns1-2/+1
2019-11-11environments: don't try to modify run-env if a spec is not installed (#13589)Adam J. Stewart1-2/+2
Fixes #13529 Fixes #13509
2019-11-11py-numpy: added version 1.17.4 (#13670)Adam J. Stewart1-1/+2
2019-11-11CMake: added version 3.13.5 (#13671)Adam J. Stewart1-12/+13
2019-11-11nlohmann-json 3.7.2 (#13672)Axel Huebl1-0/+1
Add the latest bugfix release.
2019-11-10Improve spack checksum formatting (#13666)Adam J. Stewart2-2/+5
* Improve spack checksum formatting * Add colon * Fix Python 2 bug
2019-11-10Update default PyTorch variants (#13667)Adam J. Stewart1-3/+3
2019-11-09Add py-scipy 1.3.2 (#13663)Adam J. Stewart1-17/+16
2019-11-09Add grass 7.8.1 (#13664)Adam J. Stewart1-1/+2
2019-11-09New Package: py-pyside2 (#13647)Kelly (KT) Thompson1-0/+53
* New Package: py-pyside2 https://wiki.qt.io/Qt_for_Python The Qt for Python project aims to provide a complete port of the PySide module to Qt 5. The development started on GitHub in May 2015. The project managed to port Pyside to Qt 5.3, 5.4 & 5.5. During April 2016 The Qt Company decided to properly support the por * Address review comments: + Add a variant for `+doc` and only depned on some packages if this variant is active. + Enable building the tests if requested. + Correct registered required verions for python and qt. * Remove dead code, fix depends_on command args. * fix one more flake8 issue. * One more fix to arguments and change version name to .
2019-11-09hpx: fix incompatible cxxstd with boost and compiling tests (#13660)Teodor Nikolov1-6/+5
* Add a variant for tests and parallelize builds - Fix a bug with boost defaulting to cxxstd=98 when cxxstd=11 is the minimum for hpx - Disable tests by default and use a variant to enable them if requested - Enable parallel builds: each process takes up to 1Gb when tests are not enabled. * Remove tests variant - The variant doesn't change what gets installed. Testing can be activated using `spack install --test=root hpx`
2019-11-09Fix visit+ (#13652)Seth R. Johnson3-9/+27
* Propagate MPI option in VTK to NetCDF This fixes a conflict message reads as though NetCDF always requires hdf5+mpi. It allows `visit~mpi` to resolve correctly without an additional `^netcdf~mpi`. * Tell VisIt not to look for 'hdf5_mpi' library
2019-11-09graphviz: Fix patch URL (#13654)Michael Kuhn1-3/+3
* graphviz: Fix patch URL * Switch setup_environment to setup_build_environment
2019-11-09grpc: update to 1.24.3 (#13658)Figroc Chen1-1/+2
2019-11-08update openfoam versions, sha256 values and download directory (#13653)Mark Olesen1-6/+13
- patched versions are located in the same directory as the original release. For example, 1906_191103 is located in the 'v1906/' directory, not in 'v1906_191103/'. - add master branch as a known version
2019-11-08New Package py-portend (#13584)Marc Mengel1-0/+21
* package py-portend * package py-portend * autopep8, docutils cleanup * dependency in wrong package * Update var/spack/repos/builtin/packages/py-portend/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * license bits * dependencies again
2019-11-08new package: py-zc-buildout (#13585)Marc Mengel1-0/+17
* package py-zc-buildout * package py-zc-buildout * Update var/spack/repos/builtin/packages/py-zc-buildout/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-zc-buildout/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * license bits * Update var/spack/repos/builtin/packages/py-zc-buildout/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-11-08New Package: py-cherrypy (#13587)Marc Mengel1-0/+23
* package py-cherrypy * package py-cherrypy * autopep8, docutils cleanup * Update var/spack/repos/builtin/packages/py-cherrypy/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-cherrypy/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-cherrypy/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * portend depends on tempora, not cherrypy directly * setuptools_scm bits * dependency one level up * license bits * Update var/spack/repos/builtin/packages/py-cherrypy/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-11-08py-torchvision: add 0.4.2 (#13651)Adam J. Stewart1-1/+3
2019-11-08openPMD-api: JSON Always On (#13641)Axel Huebl1-9/+5
JSON is not a compile-time variant anymore and a mandatory dependency from now on.
2019-11-08fluxbox: fix the comparison method with zero. (#13642)t-karatsu2-0/+14
2019-11-08Timemory (#13503)Jonathan R. Madsen1-0/+83
* Create timemory/package.py * Update package.py * mpi default to on * Update package.py * Update package.py * Update var/spack/repos/builtin/packages/timemory/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py * Update package.py * Update package.py - cleanup - python deps specify type - python 2.6 compatibility - double quotes to single quotes * Update package.py * Update package.py
2019-11-08precice: add compiler conflicts (#13644)Frédéric Simonis1-0/+7
2019-11-08Update openfoam to use new environment api (ref: #11115, 9ddc98e46a73) (#13645)Mark Olesen2-31/+40
- build: no special treatment - already addressed in the spack-Allwmake script - run: use environment from the OpenFOAM etc/bashrc
2019-11-07llvm: fix PythonString::GetString for >=python-3.7 (#13631)Daryl W. Grunau2-0/+42
* llvm: fix PythonString::GetString for >=python-3.7 * llvm/package.py: fix when the patch should be applied
2019-11-07new package: py-tempora (#13582)Marc Mengel1-0/+22
* package py-tempora * package py-tempora * Update var/spack/repos/builtin/packages/py-tempora/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * missing deps * Update var/spack/repos/builtin/packages/py-tempora/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-tempora/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-tempora/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * license bits
2019-11-07New package: py-uwsgi (#13619)Marc Mengel1-0/+18
* package py-uwsgi * package py-uwsgi * Update var/spack/repos/builtin/packages/py-uwsgi/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * license bits
2019-11-07New package: py-jaraco-functools (#13581)Marc Mengel1-0/+23
* package py-jaraco-functools * package py-jaraco-functools * autopep8, docutils cleanup * Update var/spack/repos/builtin/packages/py-jaraco-functools/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * missing deps * license bits * ...and later versions * lru cache dep change from adamjstewart
2019-11-07Balay/ginkgo 1.1.0 (#13632)Satish Balay1-1/+4
* ginkgo: add version 1.1.0 * Ginkgo: add conflict for gcc older than version 5.3
2019-11-07bugfix: mirror path works for unknown versions (#13626)Todd Gamblin2-2/+8
`mirror_archive_path` was failing to account for the case where the fetched version isn't known to Spack. - [x] don't require the fetched version to be in `Package.versions` - [x] add regression test for mirror paths when package does not have a version
2019-11-07py-pyside: fix setup files to support python 3.5. (#13613)Kelly (KT) Thompson1-0/+11
This fix already exists in the development branch of pyside. See https://github.com/pyside/pyside-setup/pull/55.
2019-11-07elmer-fem: add devel branch (#13630)Justin S1-0/+1
2019-11-07PyTorch: Add 1.3.1 (#13629)Adam J. Stewart1-0/+1
2019-11-07(py)arrow: new versions (#13561)Andreas Baumbach2-3/+17
* (py)arrow: new versions * move py-arrow source to github as not all versions are on pypi same checksum as pypi, adding build_directory * move back to pypi sources * drop 0.15.0 and 0.14.1 as only .whl are available on pypi * add new dependencies * Update var/spack/repos/builtin/packages/py-pyarrow/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-11-07new package: py-convertdate (#13573)Andreas Baumbach1-0/+21
* new package: py-convertdate * Update docstring
2019-11-07Speed up PyTorch build (#13621)Adam J. Stewart1-6/+18
2019-11-07bam-readcount: a new package. (#13628)健美猞猁1-0/+15
2019-11-07m4: fixed macOS version identification on patch (#13623)Josh Deaton1-1/+3
Patch was not being applied in recent versions of macOS. Homebrew is still applying patch to any version after High Sierra.
2019-11-06py-jupyter-core add new version and setuptools dependency (#13424)Andreas Baumbach1-13/+15
* py-jupyter-core add new version and setuptools dependency * update checksums to use pypi * fixup url and python dep type * Update var/spack/repos/builtin/packages/py-jupyter-core/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-11-06new package: py-jdatetime (#13569)Andreas Baumbach1-0/+15
* new package: py-jdatetime * Update var/spack/repos/builtin/packages/py-jdatetime/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-11-06ncview: Fix dependency check (#13615)Michael Kuhn1-1/+1
netcdf has been renamed to netcdf-c.
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