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2023-05-04Update vendored ruamel.yaml to v0.17.21 (#37008)Massimiliano Culpo73-8601/+15044
* Vendor ruamel.yaml v0.17.21 * Add unit test for whitespace regression * Add an abstraction layer in Spack to wrap ruamel.yaml All YAML operations are routed through spack.util.spack_yaml The custom classes have been adapted to the new ruamel.yaml class hierarchy. Fixed line annotation issue in "spack config blame"
2023-05-04Remove the old spec format in configuration (#37425)Massimiliano Culpo2-303/+1
The format was deprecated in v0.15
2023-05-04Add pika 0.15.0 (#37403)Mikael Simberg1-0/+1
2023-05-04Deprecate `env:` as top level environment key (#37424)Massimiliano Culpo6-61/+68
2023-05-04acfl: add compiler-package mapping and fix version number (#36768)Annop Wongwathanarat3-16/+5
2023-05-04buildcache metadata: store hash -> prefix mapping (#37404)Harmen Stoppels1-18/+22
This ensures that: a) no externals are added to the tarball metadata file b) no externals are added to the prefix to prefix map on install, also for old tarballs that did include externals c) ensure that the prefix -> prefix map is always string to string, and doesn't contain None in case for some reason a hash is missing
2023-05-04Add patches for generic context coroutine stack allocation in pika on macos ↵Mikael Simberg6-0/+73
(#37288)
2023-05-04cabana: Add optional silo build (#37393)Sam Reeve1-1/+3
2023-05-03py-lightly: add v1.4.4 (#37406)Adam J. Stewart1-0/+1
2023-05-03docs: update RHEL/CentOS system prerequisites (#36720)Bryce Torcello1-6/+3
2023-05-03libjwt: add v1.15.2 (#37333)Alec Scott1-0/+1
2023-05-03mii: add v1.1.2 (#37335)Alec Scott1-0/+1
2023-05-03texinfo: add v7.0.3 (#37348)Alec Scott1-0/+1
2023-05-03py-mne: add 1.3.1 (#37399)Manuela Kuhn1-2/+1
2023-05-03py-neurora: add 1.1.6.9 (#37398)Manuela Kuhn1-0/+1
2023-05-03py-neurokit2: add 0.2.4 (#37396)Manuela Kuhn1-0/+1
2023-05-03py-bidskit: add 2023.2.16 (#37395)Manuela Kuhn1-0/+1
2023-05-03py-nilearn: add 0.10.1 (#37394)Manuela Kuhn1-4/+6
2023-05-03perl-module-install: add v1.21 (#37341)Alec Scott1-0/+1
2023-05-03Add 'zypper' to the valid container.os_packages options (#36681)Egbert Eich3-2/+27
Signed-off-by: Egbert Eich <eich@suse.com> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> Co-authored-by: e4t <e4t@users.noreply.github.com>
2023-05-03Allow adding specs to an environment without the 'specs' attribute (#37378)Massimiliano Culpo2-2/+24
2023-05-03remove unused global in bindist tests (#37358)Harmen Stoppels2-10/+0
* remove unused global in bindist tests * remove unused function
2023-05-03Intel MPI Benchmarks 'IMB-P2P' is available for versions newer than 2018. ↵Jack Morrison1-1/+1
(#37360)
2023-05-03buildcache push: improve printing (#36141)Scott Wittenburg9-224/+284
2023-05-03intel-tbb: Add versions 2021.8.0 and 2021.9.0 (#37391)Tim Haines1-0/+2
2023-05-02libintl, iconv, gettext: account for libc provider and externals (#35450)Chris Green39-127/+243
* libiconv can be provided by libc, so update packages which depend on libiconv to require the iconv virtual instead * Many packages need special consideration when locating iconv depending on whether it is provided by libc (no prefix provided) or the libiconv package (in that case we want to provide a prefix) * It was also noticed that when an iconv external was provided, that there was interference with linking (this should generally be handled by Spack's compiler wrappers and bears further investigation) * Like iconv, libintl can be provided by libc or another package, namely gettext. It is not converted to a provider like libiconv because it provides additional routines. The logic is similar to that of iconv but instead of checking the provider, we check whether the gettext installation includes libintl.
2023-05-02Guard use of OpenMP in rocblas test (#36673)renjithravindrankannath2-1/+415
* Provide openmp from rocm-open-extras for roblas test * Addressing the prechecks/audit/package-audits check * Correcting style check errors. * rocm-openmp-extras path veriable restricting for test * Correcting the env variable to run_tests * Guard use of OpenMP to make it optional in rocblas test * Removing unused patch
2023-05-02trilinos: add version 14.0.0 (#37387)Zack Galbreath1-0/+1
2023-05-02GitHub Actions: do not install six in CI (#37361)Massimiliano Culpo9-104/+19
* GitHub Actions: do not install six in CI * Remove workflow code that was commented out * Remove any use of "six" from packages
2023-05-02hip: Patch to handle file reorg changes for the tests (#36993)renjithravindrankannath2-0/+142
* Patch to handle file reorg changes for the tests * Correcting patch file name * Limiting hipify-clang path to 5.4 and later * Set hipify-clang path env in CMake
2023-05-02gromacs: add 2023.1 version (#37371)Daniel Ahlin1-0/+1
2023-05-02muparser: add v2.3.4 (#37298)Alec Scott1-0/+1
2023-05-02globalarrays: add v5.8.2 (#37325)Alec Scott1-0/+1
2023-05-02spot: add v2.11.5 (#37299)Alec Scott1-0/+1
2023-05-02osi: add v0.108.8 (#37340)Alec Scott1-0/+1
2023-05-02ports-of-call: add version 1.5.1 (#37366)Richard Berger1-0/+1
2023-05-02proj: don't depend on googletest at build time (#37240)Glenn Johnson1-1/+1
* proj: v6 depends on googletest at build time * Have cmake block check for run_tests
2023-05-02uriparser: add v0.9.7 (#37350)Alec Scott1-0/+1
2023-05-02redis-plus-plus: add v1.3.8 (#37344)Alec Scott1-0/+1
2023-05-02lua: add v5.4.5 (#37334)Alec Scott1-0/+1
2023-05-02sqlitebrowser: add v3.12.2 (#37300)Alec Scott1-0/+1
2023-05-02intel-tbb: backport GCC 13 support patch (#37291)Jonathon Anderson2-0/+31
2023-05-02steps: add version 4.1.1, remove others (#37250)Tristan Carel1-30/+97
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-05-02dealii: add support for 9.4.1 and 9.4.2 (#36627)Luca Heltai1-3/+19
* Make sure the standard is cxx17 for 9.4: * Fix patches for > 9.4
2023-05-02libpfm4: add version 4.13.0 (#37364)Mark W. Krentel1-0/+1
2023-05-02gdb: add missing zstd, add system dep for zlib (#37369)Harmen Stoppels1-4/+10
2023-05-02Disable module file generation by default (#37258)Massimiliano Culpo4-16/+52
* Disable module generation by default (#35564) a) It's used by site administrators, so it's niche b) If it's used by site administrators, they likely need to modify the config anyhow, so the default config only serves as an example to get started c) it's too arbitrary to enable tcl, but disable lmod * Remove leftover from old module file schema * Warn if module file config is detected and generation is disabled --------- Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-05-02visit: python 3.9 and above acceptable (#37071)Olivier Cessenat1-1/+1
2023-05-02gh: add v2.28.0 (#37302)Alec Scott1-0/+1
2023-05-02amrex: add 23.05 (#37362)Weiqun Zhang1-1/+2