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2022-06-13Pin setuptools version in Github Action Workflows (#31118)Massimiliano Culpo2-2/+2
fixes #31109
2022-06-13netpbm: run custom test command (#31072)Qian Jianhua1-0/+9
* netpbm: run custom test command * fix styles * change method name
2022-06-13sloccount: add build-time dependency on flex (#31106)iarspider1-0/+1
2022-06-13SCR release v3.0, including components (#29924)Elsa Gonsiorowski, PhD9-12/+50
2022-06-13Remove filter operation for superlu-dist to avoid permission issues on ↵liuyangzhuan1-36/+10
read-only systems (#30970) * added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize * adding gptune package * minor fix for macos spack test * update patch for py-scikit-optimize; update test files for gptune * fixing gptune package style error * fixing unit tests * a few changes reviewed in the PR * improved gptune package.py with a few newly added/improved dependencies * fixed a few style errors * minor fix on package name py-pyro4 * fixing more style errors * Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * resolved a few issues in the PR * fixing file permissions * a few minor changes * style correction * minor correction to jq package file * Update var/spack/repos/builtin/packages/py-pyro4/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * fixing a few issues in the PR * adding py-selectors34 required by py-pyro4 * improved the superlu-dist package * improved the superlu-dist package * moree changes to gptune and py-selectors34 based on the PR * Update var/spack/repos/builtin/packages/py-selectors34/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi * fixing style issue of gptune * changing file mode * improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant * fixing style error * corrected pddrive_spawn path in gptune test; enforcing gcc>7 * fixing style error * setting environment variables when loading gptune * removing debug print in hypre/package.py * adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR * changing site_packages_dir to python_platlib * not using python3.9 for py-gpy, which causes due to dropped support of tp_print * more replacement of site_packages_dir * fixing a few dependencies in gptune; added a gptune version * adding url for gptune * minor correction of gptune * updating versions in butterflypack * added a version for openturns * added a url for openturns * minor fix for openturns * Update var/spack/repos/builtin/packages/openturns/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * added version2.1.1 for butterflypack * fixing a tag in butterflypack * minor fix for superlu-dist * removed file filter for superlu-dist * Update var/spack/repos/builtin/packages/superlu-dist/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> * superlu-dist: add version detection for the testing; removing unused lines Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-06-13Fix spack style arbitrary git rev as base (#31019)Jordan Galby2-5/+25
Allow `spack style -b @` or `spack style -b origin/develop` to work as expected. Regression since spack 0.17 #25085
2022-06-13nvhpc: conflict with all compilers except for gcc (#31073)Sergey Kosukhin1-6/+6
2022-06-13Add flux-core v0.39.0 and v0.40.0 and flux-sched v0.23.0 (#31061)Mark Grondona2-0/+4
2022-06-13Fix tracy-client package (#31076)Mikael Simberg1-4/+4
2022-06-13Fix download URL for pcre package (#31077)Carson Woods1-1/+1
2022-06-13Fix packages that will break with PIL 10 (#31071)Adam J. Stewart2-3/+7
2022-06-13atompaw: add v4.2.0.1 (#31087)Simon Pintarelli1-1/+2
apply ifort patch including v4.2.0.0, but not for 4.2.0.1 anymore
2022-06-13opa-psm2: add v11.2.228 (#31089)Jack Morrison1-0/+3
2022-06-13adios2: add v2.8.1 (#31090)Erik Schnetter1-2/+2
2022-06-13py-py-spy: fix dependency on libunwind (#31013)Brice Videau1-0/+1
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-06-12py-breathe: new version 4.33.1 and fix dependencies (#31098)Seth R. Johnson1-4/+14
* py-breathe: new version 4.33.1 and fix dependencies * remove unused dependencies
2022-06-12Addllvmv1405 (#31099)Paul R. C. Kent1-0/+1
2022-06-12Limit Jasper version for WPS (#31088)marcosmazz1-1/+1
* Limit Jasper version for WPS Jasper@3: changed API and does not support interfaces used by WPS. This prevented ungrib.exe build and failed silently.
2022-06-12py-sphinxcontrib-bibtex: new version 2.4.2 (#31097)Seth R. Johnson1-8/+8
2022-06-11fix doubly shell quoting args to `spack spec` (#29282)Danny McClanahan5-19/+145
* add test to verify fix works * fix spec cflags/variants parsing test (breaking change) * fix `spack spec` arg quoting issue * add error report for deprecated cflags coalescing * use .group(n) vs subscript regex group extraction for 3.5 compat * add random test for untested functionality to pass codecov * fix new test failure since rebase
2022-06-10bugfix: preserve dict order for `Spec.dag_hash()` in Python 2 (#31092)Todd Gamblin2-3/+80
Fix a bug introduced in #21720. `spack_json.dump()` calls `_strify()` on dictionaries to convert `unicode` to `str`, but it constructs `dict` objects instead of `collections.OrderedDict` objects, so in Python 2 (or earlier versions of 3) it can scramble dictionary order. This can cause hashes to differ between Python 2 and Python 3, or between Python 3.7 and earlier Python 3's. - [x] use `OrderedDict` in `_strify` - [x] add a regression test
2022-06-10ripgrep: remove need for llvm (#31062)Asher Mancinelli1-7/+0
2022-06-10clingo: fix string formatting in error messages (#31084)Sergey Kosukhin1-2/+2
2022-06-10babelflow: fix conditional constraint in "when" decorator (#31057)Cyrus Harrison1-2/+2
2022-06-10enzyme: new version 0.0.32 (#31081)Valentin Churavy1-1/+7
Add LLDEnzyme to libs list
2022-06-10build(deps): bump actions/setup-python from 3.1.2 to 4 (#31059)dependabot[bot]4-19/+19
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 3.1.2 to 4. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/98f2ad02fd48d057ee3b4d4f66525b231c3e52b6...d09bd5e6005b175076f227b13d9730d56e9dcfcb) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-06-09exago@1.4.1: : needs py-pytest (#31060)eugeneswalker1-0/+2
2022-06-09py-xdot requires explicit dependency on harfbuzz (#30968)Gregory Lee1-2/+7
2022-06-09py-kornia: add v0.6.5 (#31067)Adam J. Stewart1-0/+3
2022-06-09py-pillow: add v9.1.1 (#31068)Adam J. Stewart1-14/+7
2022-06-09py-pytorch-lightning: add v1.6.4 (#31069)Adam J. Stewart1-10/+26
2022-06-09py-timm: add v0.5.4 (#31070)Adam J. Stewart1-0/+4
2022-06-09add fix for implicit includes with newer vers of gcc (#31056)Cyrus Harrison1-0/+5
2022-06-09nfft, pnfft: fix detection of fftw variants (precision) (#30935)Martin Lang2-26/+40
* nfft, pnfft: fix detection of fftw variants (precision) * nfft, pnfft: use fftw's selected_precisions; avoid repetitive calls to spec Co-authored-by: Martin Lang <martin.lang@mpsd.mpg.de>
2022-06-09Allow more fine-grained control over what submodules are updated (#27293)Tim Fuller5-6/+78
The "submodules" argument of the "version" directive can now accept a callable that returns a list of submodules, in addition to the usual Boolean values
2022-06-09clingo: fix ~python build (#30824)Adam J. Stewart2-10/+15
2022-06-08Cancel running workflows automatically on PR update (#31044)Massimiliano Culpo5-0/+22
* Cancel running workflows automatically on PR update * Add the last update later to check cancellation is working * Use github.run_number instead of github.sha
2022-06-08lua-mpack: build with -fPIC always (#31054)Asher Mancinelli1-1/+1
2022-06-08py-memray: add new package (#31033)Adam J. Stewart1-0/+27
* py-memray: add new package * Link to Python * Add missing non-Python deps
2022-06-08cuDNN: add v8.4.0.27-11.6 (#31034)Adam J. Stewart1-0/+6
2022-06-08hpctoolkit: adjust dependencies for develop (#31050)Mark W. Krentel1-4/+10
The develop branch now uses libiberty, but not binutils or libdwarf.
2022-06-08Draft: Pending #29806 [py-sentry-sdk] added version 1.5.5 (#29143)Jen Herting1-18/+43
* [py-sentry-sdk] audited dependencies and relisted extras as variants * [py-sentry-sdk] added version 1.5.5 * [py-sentry-sdk] flake8 * [py-sentry-sdk] - added "descriptions" to variants - removed conflicts - replaced with when statements in varients
2022-06-08New package: py-colossialai (#30807)Jen Herting1-0/+28
* colossalai is dependency for deepoffense * [py-colossalai] added homepage * [py-colossalai] added dependencies and removed older versions * [py-colossalai] updated pypi url to match listed version * [py-colossalai] spack -> spack.package Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-06-08py-ytopt: add v0.0.4 (#31029)Brice Videau1-1/+2
2022-06-08new package: py-pytest-asyncio (#31040)Ryan Marcellino1-0/+27
2022-06-08py-glmsingle: add new package (#31043)Manuela Kuhn1-0/+38
2022-06-08bootstrap: account for disabled sources (#31042)Massimiliano Culpo2-4/+22
* bootstrap: account for disabled sources Fix a bug introduced in #30192, which effectively skips any prescription on disabled bootstrapping sources. * Add unit test to avoid regression
2022-06-08OpenCV: add v4.6.0 (#31022)Adam J. Stewart1-1/+8
2022-06-08py-pympler: add v1.0.1 (#31031)Adam J. Stewart1-2/+8
2022-06-08Python: add v3.10.5 (#31039)Adam J. Stewart1-0/+1
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