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2019-09-17cryptsetup package: dont vendor libuuid in util-linux (#12839)George Hartzell2-2/+10
Fixes #12829 This adds a variant to the util-linux package that controls whether it builds its own libuuid. Variant defaults to True. It enables other packages to choose to get libuuid from the libuuid package instead. This also changes the cryptsetup package to build util-linux with ~libuuid (so it uses an explicitly-Spack-built instance of libuuid instead).
2019-09-17Fix generic body during package creation (#12804)Adam J. Stewart1-14/+14
Fixes incomplete change in #11981 Use the proper variable (`body_def`) during package creation for package subclasses.
2019-09-16Allow build to proceed with failed compiler lib detection (#12756)Adam J. Stewart1-0/+4
Fixes #12732 Fixes #12767 c22a145 added automatic detection and RPATHing of compiler libraries to Spack builds. However, in cases where the parsing/detection logic fails this was terminating the build. This makes the compiler library detection "best-effort" and reports an issue when the detection fails rather than terminating the build.
2019-09-16Quote shell variable values (#12759)Adam J. Stewart1-2/+2
This updates logic which sets shell variables to quote the values, which is necessary when the value contains a space (e.g. PATH).
2019-09-16Add py-pycbc package (#12823)Adam J. Stewart1-0/+40
2019-09-16Add py-astropy 2.0.14 (#12816)Adam J. Stewart1-14/+42
2019-09-16Add py-beautifulsoup4 4.8.0 (#12815)Adam J. Stewart1-1/+3
2019-09-16Add py-mpld3 package (#12822)Adam J. Stewart1-0/+21
2019-09-16Add py-asdf package (#12817)Adam J. Stewart1-0/+26
2019-09-16Add py-bintrees package (#12818)Adam J. Stewart1-0/+18
2019-09-16Add py-lscsoft-glue package (#12821)Adam J. Stewart1-0/+23
2019-09-16Add py-jplephem package (#12819)Adam J. Stewart1-0/+19
2019-09-16Add py-ligo-segments package (#12820)Adam J. Stewart1-0/+18
2019-09-16Add py-pyopenssl package (#12824)Adam J. Stewart1-0/+24
2019-09-16Add py-semantic-version package (#12825)Adam J. Stewart1-0/+20
2019-09-16Add py-sortedcontainers package (#12826)Adam J. Stewart1-0/+18
2019-09-16Add py-weave package (#12828)Adam J. Stewart1-0/+24
2019-09-16Add py-soupsieve package (#12827)Adam J. Stewart1-0/+18
2019-09-16Relax Python version constraints on py-html5lib (#12811)Adam J. Stewart1-2/+2
2019-09-16xdmf3: new package (#12778)Chuck Atkins1-0/+44
2019-09-14qt: Fix build with GCC9 for version 4 (#12832)Ruben Di Battista2-0/+68
* qt: Fix build w/ GCC9 for @4: * qt: Fix patch filename and qt version * Fix typo in patch name
2019-09-14flang: build on arm. (#12808)Toyohisa Kameyama1-0/+2
2019-09-13Fixes identified in ecp facilities hackathon fixes:Scott Wittenburg4-33/+21
- improve mirror git repo management - minio s3 implementation needs endpoint_url - Remove image key from rebuild-index job - Remove image, rely on tags instead
2019-09-13Implement an optional compiler bootstrapping phaseScott Wittenburg10-368/+711
2019-09-13Remove CombinatorialSpecSet in favor of environments + stacksScott Wittenburg10-721/+83
2019-09-13Add pre-ci job generation for a multi-repo setupScott Wittenburg2-0/+103
2019-09-13Refactor release-jobs cmd based on use of environments (no docker either)Scott Wittenburg4-310/+193
2019-09-13Add schema for new gitlab-ci and cdash additions to environmentScott Wittenburg4-0/+220
2019-09-13py-bleach package: add version 3.1.0 (#12814)Adam J. Stewart1-4/+5
2019-09-13py-cython package: fix --test (#12813)Adam J. Stewart1-1/+1
Fix bug in string conversion of "make_jobs"
2019-09-13py-emcee package: add version 2.2.1 (#12812)Adam J. Stewart1-1/+2
2019-09-13wcslib package: add version 6.4 (#12810)Adam J. Stewart1-1/+2
2019-09-13Add diamond dependencyGlenn P Johnson1-0/+1
2019-09-13Update braker packageGlenn P Johnson1-6/+33
- add version 2.1.4 - change url to github - add perl dependencies - new version has a new source layout - filter shebang to use spack perl
2019-09-13Fixes for augustus packageGlenn P Johnson1-13/+23
- add missing perl dependency - only filter Makefile if referred to dependency is in the spec - rewrite the shebang line of scripts to use spack perl - remove tabix dependency as tabix and bgzip are part of htslib
2019-09-13Update genemark-et packageGlenn P Johnson1-1/+19
- add version 4.46 - add missing perl dependencies - new version has different source layout - filter shebang to use spack perl
2019-09-13New package: py-pykwalify (#12540)Sinan1-0/+28
2019-09-13preCICE: added versions 1.6.0 and 1.6.1 (#12809)Frédéric Simonis1-0/+2
2019-09-13diamond: added version 0.9.25 (#12805)Glenn Johnson1-0/+1
2019-09-12New package: py-ruamel-yaml (#12543)Sinan1-0/+29
2019-09-12Singularity package: add version 3.4.0 (#12785)Owen Solberg2-3/+22
This version in combination with the included patch can install without root.
2019-09-12New package: cryptsetup (#12762)Owen Solberg2-0/+60
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-12add compilation option to sqlite (#12794)Sinan1-0/+5
* add compilation option to sqlite * rename variant * fix bug * re-rename variant
2019-09-12Update legion gasnet config (#12523)ktsai72-12/+32
2019-09-12BUG: recursively load modules with tcsh (#12664)Tyler Reddy1-1/+6
* for tcsh and csh, spack load -r package should now correctly load recursively instead of only loading the target package without any dependencies
2019-09-12py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795)Simo Tuomisto1-0/+2
2019-09-11fgsl: new version + fix for recent spack commit (#12790)brietzke1-0/+6
2019-09-11module parsing: make heuristic to get paths from modules more robust (#12693)Greg Becker2-36/+87
* module parsing: make heuristic to get paths from modules more robust * refactor module parsing
2019-09-11jsoncpp: new versions, support cxxstd variant. (#12780)Chris Green1-0/+20
2019-09-10create package popt (#12783)Owen Solberg1-0/+15
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