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#11528 updated Stage to always store a Package's source in a fixed
directory accessible via `Stage.source_path` This left behind a
number of packages which were expecting to access the source code
via `Stage.path`. This Updates those packages to use
`Stage.source_path` instead.
This also updates the name of the fixed directory: The original name
of the fixed directory was "src", so if an expanded archive created a
"src" directory, then users inspecting the directory structure could
see paths like "src/src" (which wasn't wrong but could be confusing).
Therefore this also updates the name of the fixed directory to
"spack-src".
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Fixes #11678
`spack compiler find` was not searching `PATH` when provided with no
arguments. ea7910a updated the API for the search function and the
command logic did not update how it called this function. This also
adds a test to ensure that `spack compiler find` will collect
compilers from `PATH`.
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* warpx: only allow master branch, and fix build on darwin
* warpx: Added CXXFLAGS=-std=c++11 for clang
* warpx: further clean up of openmp and c++11 flags
* warpx: Get around the problem with resources
The update uses placement instead of destination
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Fixed logic behind flecsi backends to not require legion for an mpi
build and to better support required combinations.
Also made graphviz support and tutorial building optional
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* Add additional common C++ and Fortran header file extensions
* Add .hxx extension
* Add .txx and .tcc extensions
* Add .icc extension
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* new python package/py-typesentry
* add proper version
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* Add support for python3 in new versions of VTK.
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* Paraview/VTK: Fix failure on intel builds
Paraview@5.6.0 fails to build with intel compilers on certain platforms.
Error messages have been traced to the optional MotionFX lib.
(see https://discourse.paraview.org/t/error-build-5-6-0-rc1/572)
Turning off motionfx allows for succesful builds on these platforms.
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"spack module tcl find -r <spec>" (and equivalents for other module
systems) was failing when a dependency was installed in an upstream
Spack instance. This updates the module index to handle locating
module files for upstream Spack installations (encapsulating the
logic in a new class called UpstreamModuleIndex); the updated index
handles the case where a Spack installation has multiple upstream
instances.
Note that if a module is not available locally but we are using the
local package, then we shouldn't use a module (i.e. if the package is
also installed upstream, and there is a module file for it, Spack
should not use that module). Likewise, if we are instance X using
upstreams Y and Z like X->Y->Z, and if we are using a package from
instance Y, then we should only use a module from instance Y. This
commit includes tests to check that this is handled properly.
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* Add latest releases for pFUnit
- 3.2.10, 3.3.0, 3.3.1, 3.3.2, 3.3.3
- 3.2.9 now with sha256
- 4.0.0 is added, but commented out (build fails, see errors)
Verification builds
Darwin x86_64:
dantopa@cn100:pr-pfunit-darwin-general.spack $ spack find pfunit
==> 5 installed packages
-- linux-centos7-x86_64 / gcc@4.8.5 -----------------------------
pfunit@3.2.9 pfunit@3.2.10 pfunit@3.3.0 pfunit@3.3.1 pfunit@3.3.2 pfunit@3.3.3
Darwin Power9:
-- linux-rhel7-ppc64le / gcc@4.8.5 ------------------------------
pfunit@3.2.9 pfunit@3.2.10 pfunit@3.3.0 pfunit@3.3.1 pfunit@3.3.2 pfunit@3.3.3
Darwin ARM:
dantopa@cn805:pr-pfunit-darwin-arm.spack $ spack find pfunit
==> 5 installed packages
-- linux-rhel7-aarch64 / gcc@4.8.5 ------------------------------
pfunit@3.2.9 pfunit@3.2.10 pfunit@3.3.0 pfunit@3.3.1 pfunit@3.3.2 pfunit@3.3.3
2019-05-05
Signed-off-by: Daniel Topa <dantopa@lanl.gov>
* answer @citibeth comments
Signed-off-by: Daniel Topa <dantopa@lanl.gov>
* shortened offending comment to comply with flake8; suppressed error message on entry for v4.0.0
Signed-off-by: Daniel Topa <dantopa@lanl.gov>
* removed tailing space qt 20:55
Signed-off-by: Daniel Topa <dantopa@lanl.gov>
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Use python3 for latest paraview and catalyst versions.
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Build the docker image for the new package index REST API on each
merge/push to develop and master.
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* Adding the dateutils package
* Removing superfluous dependencies
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- also remove coverage calls of these commands
- we JUST want coverage to tell us what is in the test suite.
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(#11594)
Spack currently tries to unify everything in the DAG, but this is too strict for build dependencies, where it is fine to build a dependency with a tool that conflicts with a version fo that tool for a dependent's build.
To enable a workaround for conflicts among build dependencies, so that users can install in multiple steps to avoid these conflicts, make the following changes:
* Dont apply package dependency constraints for build deps of installed packages
* Avoid applying constraints for installed packages vs. concrete packages
* Mark all dependencies of installed packages as visited in normalization method
* don't remove dependency links for concrete specs in flat_dependencies
Also add tests:
* Update test to ensure that link dependencies of installed packages have constraints applied
* Add test to check for proper handling of transitive dependencies (which is currently not the case)
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* fix qt build on gcc8.3
* source patches from upstream
* remove old code adding the same patch
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ADIOS2 is the latest implementation of the ADaptable Input Output System,
ADIOS. This brand new architecture was designed to continue supporting the
performance legacy of ADIOS, and extend its current capabilities to address
current and future input/output (IO) challenges in the scientific data
lifecycle through effective research and development (R&D) activities.
ADIOS2 was recently added as a Third Party Library of Trilinos when it
was integrated to IOSS, a library inside the SEACAS package.
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List the latest version of each package in JSON encoding.
Preparation for consumption for a "spack badge" service.
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- spack.compilers.find_compilers now uses a multiprocess.pool.ThreadPool to execute
system commands for the detection of compiler versions.
- A few memoized functions have been introduced to avoid poking the filesystem multiple
times for the same results.
- Performance is much improved, and Spack no longer fork-bombs the system when doing a `compiler find`
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* add openmp variant to lammps
* add conflict for %gcc@9: and +openmp
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- We use `spack list --foramt=html` now, as it is much faster and doesn't
make the docs build take forever.
- Remove `spack list --format=rst` as it is no longer used.
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* added tix package and python variant for tix
* addressing tix review requests
* python +tix requires +tkinter
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- keep this disabled until the `compiler find` fork bomb is fixed.
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- `stage.source_path` was previously overloaded; it returned `None` if it
didn't exist and this was used by client code
- we want to be able to know the `source_path` before it's created
- make stage.source_path available before it exists.
- use a well-known stage source path name, `$stage_path/src` that is
available when `Stage` is instantiated but does not exist until it's
"expanded"
- client code can now use the variable before the stage is created.
- client code can test whether the tarball is expanded by using the new
`stage.expanded` property instead of testing whether `source_path` is
`None`
- add tests for the new source_path semantics
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- make tty.msg, tty.info, etc. print the exception type and stringified
message if the message argument is an exception.
- simplify parts of the code that call tty.debug(str(e))
- add extra tty.debug statements in places where exceptions were
previously ignored
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* nettle: force C99 build
* nettle: update to use c99_flag
from @alalazo
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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- `spack graph --static` (and `spack.graph.dot_graph`) now do the "right
thing" and print the possible dependency graph of provided packages.
- `spack graph --static` no longer concretizes specs, as it only relies
on class level metadata
- Previously the behavior was not consistent -- `spack graph --static`
would graph possible dependencies of concrete specs, but would only
include some of them. The new code properly pursues all possible
dependencies, and allows traversing by different dependency types.
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- `spack dependencies` can now take a --deptype argument to only traverse
particular deptypes
- add a new "common" argument for deptype in spack.cmd.common.arguments
- Database.installed_relatives() can now also take a deptype argument
- this is used by `spack dependencies --installed`
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- `PackageBase.possible_dependencies` now:
- accepts a deptype param that controls dependency types traversed
- returns a dict mapping possible depnames to their immediate possible
dependencies (this lets you build a graph easily)
- Add tests for PackageBaes
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- The 'name' attribute for packages was being set in DirectiveMeta, which
wasn't consistent with other class properties (like fullname, etc.)
- Move it to be a class property of `PackageMeta`, and add the
corresponding property method wrapper on `PackageBase`
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* add c99_flag, c11_flag to compiler class
* implement c99_flag, c11_flag for gcc
* implement c99_flag, c11_flag for arm
* implement c99_flag for cce
* implement c99_flag, c11_flag for clang
* implement c99_flag, c11_flag for intel
* implement c99_flag, c11_flag for xl
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This reverts commit 30ec13f37584ad2934ecdf5a4e86d93d35b3a76c.
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Previously, module files were not set with the same permissions as the package installation. For world-readable packages, this would not cause a problem. For group readable packages, it does:
```
packages:
mypackage:
permissions:
group: mygroup
read: group
write: group
```
In this case, the modulefile is unreadable by members of the group other than the one who installed it. Add logic to the modulefile writers to set the permissions based on the configuration in `packages.yaml`
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* Add a trailing / if file --mime does not return a mimetype with a / in it
* Flake8
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