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2020-09-14Do not assume we sit in the directory where the env file lives.Scott Wittenburg1-3/+8
2020-09-14Remove :<name> interpolation, add SPACK_VERSION variablesScott Wittenburg3-128/+94
Also fix issues with documentation to reflect changes
2020-09-14Document pipeline keys which can be global but overriddenScott Wittenburg1-6/+108
Update pipelines documentation to describe how 'tags', 'variables', 'image', 'before_script', 'script', and 'after_script' can be supplied at the top level, to be used by any of the runner mappings, and also overridden by any of the runner mappings. Also show an example of capturing the custom spack SHA at pipeline generation time, so all jobs are sure to run with the same version of spack, as a means to illustrate the $env:VARIABLE_NAME syntax.
2020-09-14Allow overridable global runner attributesScott Wittenburg3-11/+205
2020-09-14Update pipeline documentation to describe user-provided scriptsScott Wittenburg1-17/+73
2020-09-14Add test for variable interpolation and scriptsScott Wittenburg1-0/+82
2020-09-14Support variable interpolation at pipeline generation timeScott Wittenburg1-0/+10
2020-09-14Provide your own script, before_script, and after_scriptScott Wittenburg5-112/+35
2020-09-14Fix a typo in test/concretize.pyi (#18662)Massimiliano Culpo1-1/+1
2020-09-14Add new package: webbench (#18650)darmac1-0/+28
* Add new package: webbench * Update var/spack/repos/builtin/packages/webbench/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-14cpio: add --rtlib=compiler-rt for %fj (#18619)ketsubouchi1-4/+5
* cpio: add --rtlib=compiler-rt for %fj * cpio: simplify if * Update var/spack/repos/builtin/packages/cpio/package.py This seems better. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-13ngmlr: support for aarch64 (#18621)t-nojiri3-0/+59
* ngmlr: support for aarch64 * ngmlr: Fixed patch file
2020-09-13nek5000: Support Fujitsu fortran (#18659)ketsubouchi2-0/+49
2020-09-13Updated FZF package for newer versions. (#18608)Paul1-10/+17
* Support for external find. * Added latest version (0.22.0) and conditions to package to continue support for older versions.
2020-09-13use github for download (#18657)Joseph Wang1-1/+1
2020-09-12new package: py-reproject (#18641)Andrew W Elble3-0/+52
* new package: py-reproject add setuptools build/run dep to py-astropy-healpix * fixes * fix
2020-09-12Add new package: delta (#18648)darmac1-0/+28
2020-09-12cvs: add a patch for segv issue (#18649)darmac1-0/+5
2020-09-12Add new package: dbxtool (#18651)darmac1-0/+25
2020-09-12Add new package: geoip-api-c (#18653)darmac1-0/+23
2020-09-12Add new package: libspiro (#18654)darmac1-0/+22
2020-09-12Add new package: hping (#18311)darmac2-0/+66
* Add new package: hping * Update var/spack/repos/builtin/packages/hping/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/hping/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py Fix flake8 errors Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-12Add new package: jetty-project (#18555)darmac1-0/+20
* Add new package: jetty-project * refine dependency * refine maven version
2020-09-11bugfix: include configuration ignoring files with the same basename (#18487)Richarda Butler2-2/+43
* Use the config path instead of the basename * Removing unused variables Co-authored-by: Greg Becker <becker33@llnl.gov> * Test Making sure if there are 2 include config files with the same basename they are both implemented * Edit test assert Co-authored-by: Greg Becker <becker33@llnl.gov>
2020-09-11ncurses: adding external support. (#18609)Robert Blake1-7/+39
* ncurses: adding external support. * Update var/spack/repos/builtin/packages/ncurses/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/ncurses/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/ncurses/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fixing includes. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-11Environments: Avoid inconsistent state on failed write (#18538)Massimiliano Culpo4-19/+206
Fixes #18441 When writing an environment, there are cases where the lock file for the environment may be removed. In this case there was a period between removing the lock file and writing the new manifest file where an exception could leave the manifest in its old state (in which case the lock and manifest would be out of sync). This adds a context manager which is used to restore the prior lock file state in cases where the manifest file cannot be written.
2020-09-11NumPy: added v1.19.2 (#18615)Adam J. Stewart1-1/+2
2020-09-10Changes for hipsparse, rocthrust recipes for rocm_3.7.0 (#18497)srekolam3-14/+22
* changes for hipsparse,rocthrust recipes for rocm_3.7.0 * changes to rocrand for 3.7.0 * version changes
2020-09-10recipes changes for hipblas, rocprim, rocfft, rocsolver for rocm3.7.0 (#18495)srekolam5-17/+28
* recipes changes for rocprim,rocfft,rocsolver for rocm3.7.0 * changes to hipcub recipe for rocm-3.7.0 * changes to address review comments
2020-09-10Adding Missing Versions for Flux-Sched/Flux-Core and Compiler Flags (#18612)Robert Pavel2-1/+11
* Checksummed New Flux Versions Checksummed new flux versions to let spack detect them * Added CXXFlags to build Flux-sched Added missing cxxflags to build flux-sched
2020-09-10Adding Cuda Variant to SW4Lite (#18590)Robert Pavel1-1/+16
* Adding Cuda Variant to SW4Lite Added cuda variant of sw4lite as per guidance in README * Updated SW4Lite+cuda to Current Header Conventions Updated sw4lite+cuda to use current conventions for spackage include dirs * Fixing FLake8 Issue with Sw4lite+cuda Fix Fixed overly long line and further underlined sticky note reminding me to run flake8 BEFORE pushing * Switching to Spack Compiler Wrapper Switching to spack compiler wrapper for consistency
2020-09-10Dyninst: add v10.2.1 (#18611)Tim Haines1-0/+1
2020-09-10Orca: update the package. (#18593)Rémi Lacroix2-3/+29
* Orca: Add new versions. * Orca: Support OpenMPI without the legacy wrappers. By default, Spack builds OpenMPI without the legacy wrappers when using the Slurm scheduler. This breaks Orca since its binaries are hardcoded to call "mpirun". To workaround this issue, add a "mpirun" wrapper which calls "srun" when required.
2020-09-10Bugfix for fish support: overly zealous arg matching (#18528)Johannes Blaschke1-18/+59
* bugfix for issue 18369 * fix typo Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-10update CP2K pkg for 8+ (#18607)Tiziano Müller3-7/+14
* cp2k: do not support ~openmp for v8+ * sirius: version bump * cp2k: fix overlapping deps for elpa fixes #18029 * cp2k: update SIRIUS dependency for v8+ * spfft: requires CMake 3.11+ * cp2k: fix build with +sirius
2020-09-10dpdk: Avoid option conflicts between spack wrappers and Makefiles on aarch64 ↵Toyohisa Kameyama1-0/+8
gcc. (#18603)
2020-09-10prism: support for aarch64 (#18562)t-nojiri2-0/+37
* prism: support for aarch64 * prism: Change patch file.
2020-09-10GDAL: fixed Java bindings, added v3.1.3 (#18494)Adam J. Stewart1-6/+38
2020-09-10openfoam: Set 'FOAM_SIGFPE' when using Fujitsu compiler. (#18601)Tomoki, Karatsu1-1/+4
2020-09-10fj: fixed homepage URL. (#18602)Tomoki, Karatsu1-1/+1
2020-09-10NetworKit: update to v7.1, including dependencies (#18604)Fabian Brandt3-0/+4
2020-09-09Rocprofiler changes for rocm-3.7.0 release (#18599)srekolam1-5/+15
* rocprofiler changes for rocm-3.7.0 release * fix flake8 errors
2020-09-09Support older cuda arch capabilties. (#18597)Brian Van Essen1-2/+2
2020-09-09darshan-util: remove return(-1) from void function (#18504)ketsubouchi2-0/+14
* darshan-util: remove return(-1) from void function * Update var/spack/repos/builtin/packages/darshan-util/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/darshan-util/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-09Fix typo in nalu-wind package (#18596)psakievich1-1/+1
2020-09-09Support external find for gpgme. (#18594)Paul1-0/+6
2020-09-09Packages/gamess ri mp2 mini app (#18595)Christoph Junghans1-0/+44
* gamess-ri-mp2-miniapp: initial import * flake8 * Update var/spack/repos/builtin/packages/gamess-ri-mp2-miniapp/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-09Add new versions of intel-mkl (#18592)Glenn Johnson1-0/+4
2020-09-09Adding hipify-clang and aomp recipe for rocm (#18333)arjun-raj-kuppala2-0/+340
* Adding aomp recipe for rocm 3.5.0 release * hipify-clang rocm recipe * incorporated suggested changes on PR#18333 for rocm aomp recipe * remove binutils dependency and update to devicelibs tar path
2020-09-09[parallel] added version 20200822 (#18591)Jen Herting1-0/+1
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