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* Make dia build w/ Spack's X bits (and misc)
X related
- need to depend on the +X variant of gtkplus
- need to depend on freetype
misc
- fix path to tarball
* Make freetype a "build" dependency
* Freetype is not just a build dep
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* ncurses package will build ncurses and ncursesw
* Added libs property to ncurses, added fix for hstr
* flake8 is a harsh mistress
* make libs() more robust
* atop depends on ncurses
* fish depends on ncurses
* libtermkey and nano depend on ncurses
* Adjust url spacing
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* Added a patch to the openblas package to change the openmp flag for
icc to qopenmp.
* Fixed a linking problem where when using Intel compilers, it was still
pulling in -lgfortran
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* depend on readline, remove hardcoded -ltermcap
Bowtie should use Spack's readline and not explicitly depend on the
system termcap (which, on CentOS, leads to linking against the
system's tinfo library).
* Add depends_on('zlib')
* Add conflict with gcc@6:
Build seems to have trouble with 6's migration to -std=gnu++14.
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When a compiler was not found a stacktrace was displayed to user because
there were three arguments to be substituted in a string with only two
substitutions to be done.
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Fixes #4026
#1167 updated Database.reindex to keep old installation records to
support external packages. However, when a user manually removes a
prefix and reindexes this kept the records so the packages were
still installed according to "spack find" etc. This adds a check
for non-external packages to ensure they are properly installed
according to the directory layout.
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* add relion package
* fix flake8
* add licence
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* Dia requires libxml2.
* Clean up dependencies for Dia (and add X11 deps).
+ Remove dependencies on cairo and libpng. The will be satisfied via gtkplus.
+ Add dependencies on X11 libraries: libsm, libuuid, libxinerama, libxrender.
+ From a dependency diagram, it doesn't appear that we need libxml2 since this
dependency should be come in through cairo (via gtkplus). However, Dia will
not build without it.
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* Separate build integration tests; simplify test scripts
- Move build tests out of the regular Travis unit tests, add more smoke
test packages to build.
- Run all test scripts with bash -e, which fails on error.
- Factor coverage out into a Travis environment variable, so it's more
obvious from .travis.yml which tests contribute to coverage and which
don't.
- Factor dependency checking and much of the front-matter in tests
scripts into a setup.sh script, which is sourced by all the test
scripts. Extra cruft in each tests script now reduced to 2 lines at
the beginning.
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* Hackery to get gtkplus to build
PR #3077 broke gtkplus by introducing gobject-introspection.
This big hack makes things work. It has problems.
1. Rather than deal with the nasty sbang fooey in the
g-ir-tool-template.in derived scripts, it just adds a python
dependency to each package that runs one of the scripts. This lets
the `/usr/bin/env python` sbang do the right thing.
2. It stuffs a several directories on to the XDG_DATA_DIRS environment
variable, which is used for (among other things) locating the .gir
files.
3. It avoids building the gtkplus demos because I can't make the bit
that calls `gdk-pixbuf-csource` work. It doesn't think that it can
load `.png` files and all of the google hits I found suggest a bad
`loader.cache` file. The file's fine and I can strace the command
and watch it read it in... Many, many hours wasted here.
In spite of the demo failing, the tests pass and an emacs built
with this lib seems to work.
* Fix sbang so everyone needn't depend_on python
Rather than have every package that
`depends_on('gobject-introspection')` also need to
`depend_on('python')`, this commit fixes the
scripts (e.g. `g-ir-scanner`).
The interesting bit is in the gobject-introspection package. There is
a beefy comment there that is included below.
The commit also removes the now un-necessary dependencies from various
packages.
I have two reservations about this commit:
1. How portable is the "insertion" sed command? I'm particularly
worried that some sed's might need the line to insert to be on a
different line, which I can't imagine how to cram into the
Makefile.in.
The solution I see to this is rather than extending the existing
sed command in the Makefile I could shim in another line in the
rule and e.g. call a bit of Perl (or Python, I suppose) which would
end up being much neater.
2. As written it always uses Spack's `.../bin/sbang`, which might or
might not be a good idea.
If I use "the solution" from number 1 above, then I can check the
line length before I munge it. Otherwise???
---
This package creates several scripts from |
toosl/g-ir-tool-template.in. In their original form these |
scripts end up with a sbang line like |
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`#!/usr/bin/env /path/to/spack/python`. |
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These scripts are generated and then used as part of the build |
(other packages also use the scripts after they've been |
installed). |
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The path to the spack python can become too long. Because these |
tools are used as part of the build, the normal hook that fixes |
this problem can't help us. |
This package fixes the problem in two steps: |
- it rewrites the g-ir-tool-template so that its sbang line |
refers directly to spack's python (filter_file step below); and |
- it patches the Makefile.in so that the generated Makefile has an |
extra sed expression in its TOOL_SUBSTITUTION that results in |
an `#!/bin/bash /path/to/spack/bin/sbang` unconditionally being |
inserted into the scripts as they're generated. |
* Cairo needs python when it's +X
Cairo needs to depend_on python when it's +X. I think it's an
indirect requirement that's coming in via libxcb).
* Flake8 cleanup
* Make cairo's dep on python be type=build
This seems to be the right thing and seems to produce a result
that works (I can build gtk+ and then emacs+X on top of it).
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* ghostscript: add version 9.21 and handle new URL format
* ghostscript: add url of latest version to fix `spack versions`
* ghostscript: use github for all versions our package provides (>= 9.18)
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- Sometimes you need something mindless to do.
- Sometimes it can be helpful, as well.
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* Add missing readline dependency to sqlite
* Fix typo
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* matplotlib and basemap require setuptools to run properly together
* flake 8 fix
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Commit-type: bug-fix
Funded-by: IDEAS
Project: xSDK
Reported-by: "Klinvex, Alicia Marie" <amklinv@sandia.gov>
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- add Version.__format__ to support new-style formatting.
- Python3 doesn't handle this well -- it delegates to
object.__format__(), which raises an error for fancy format strings.
- not sure why it doesn't call str(self).__format__ instead, but that's
hwo things are.
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* add kokkos package
* fix flake8
* add descriptions to kokkos variants
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zsh build will fail with
configure: error: "No terminal handling library was found on your system."
if ncurses is not found.
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* perl: provide +gdbm variant for use when system dbm is missing or buggy
* perl: remove gdbm variant; always depends on gdbm
* perl: pass gdbm paths as Configure arguments
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* Add API Docs for lib/spack/llnl
* Clean up after previous builds
* Better fix for purging API docs
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The blast+ configure script supports building
--with-{python,perl}=path and --without-{python,perl}.
This commit makes the use of those two languages configurable via
variants and adds dependencies and explicit --with-... or
--without-... flags to configure.
Python was a non-optional dependency, now it is a variant that
defaults to `True`.
Perl was not previously an explicit dependency but the configure
script was likely to discover one on your system (`/usr/bin/perl`).
It is now a variant that defaults to `True`.
I am unable to accurately determine what these flags to the configure
script enable. My users are frustrated by the dependency on Python in
particular because it constrains the other modules that they can have
loaded for new discernible benefit.
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