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2023-08-22parallelio: add v2.6.1 (#39479)Jim Edwards3-0/+63
2023-08-22Bump sphinx-rtd-theme from 1.2.2 to 1.3.0 in /lib/spack/docs (#39562)dependabot[bot]1-1/+1
Bumps [sphinx-rtd-theme](https://github.com/readthedocs/sphinx_rtd_theme) from 1.2.2 to 1.3.0. - [Changelog](https://github.com/readthedocs/sphinx_rtd_theme/blob/master/docs/changelog.rst) - [Commits](https://github.com/readthedocs/sphinx_rtd_theme/compare/1.2.2...1.3.0) --- updated-dependencies: - dependency-name: sphinx-rtd-theme dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-21openPMD-api: 0.15.2 (#39528)Axel Huebl1-3/+4
Latest patch release.
2023-08-21C-Blosc2: v2.10.2 (#39537)Axel Huebl1-1/+3
This fixes regressions with external dependencies introduced in 2.10.1
2023-08-21[bats] Update to v1.10.0 (#39561)Kamil Iskra1-4/+9
* [bats] Update to v1.10.0 Original bats has been abandoned for years; nowadays it's community-maintained. * [bats] Fix style
2023-08-21tasmanian@:7.9 +cuda conflicts with cuda@12 (#39541)eugeneswalker1-0/+3
2023-08-21add sundials v6.6.0 (#39526)David Gardner1-0/+1
2023-08-21singularityce: fix after no spaces in Executable allowed (#39553)Wouter Deconinck1-6/+6
2023-08-21amdblis recipe: adding variant for a performance flag (#39549)Dr Marco Claudio De La Pierre1-0/+6
* amdblis recipe: adding variant for a performance flag Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com> * typo fix Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com> * style fix Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com> * another typo fix Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com> * one more style fix Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com> --------- Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com>
2023-08-21Update cp2k recipe (#39128)Taillefumier Mathieu2-4/+21
Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi> Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
2023-08-21aws-sdk-cpp: new versions and greatly reduce install size(#39511)Harmen Stoppels1-0/+6
2023-08-21cepgen: new version 1.1.0 (#39550)Wouter Deconinck1-0/+4
2023-08-21whizard: new versions 3.1.1 and 3.1.2 (#39540)Wouter Deconinck1-0/+2
2023-08-21zlib: new version 1.3 (#39539)Wouter Deconinck1-0/+1
2023-08-21zlib: add git url (#39533)Wouter Deconinck1-0/+1
2023-08-18cdo: add v2.2.2 (#39506)Brian Spilner1-2/+8
* update cdo-2.2.2 * add note on hdf5
2023-08-18less: update version, dependencies (#39521)Todd Gamblin1-0/+3
2023-08-18spack.bat: Fixup CL arg parsing (#39359)John W. Parent1-51/+29
Previous changes to this file stopped directly processing CL args to stop batch `for` from interpolating batch reserved characters needed in arguments like URLS. In doing so, we relied on `for` for an easy "split" operation, however this incorrectly splits paths with spaces in certain cases. Processing everything ourselves with manual looping via `goto` statements allows for full control over CL parsing and handling of both paths with spaces and reserved characters.
2023-08-18[py-gradio-client] New package (#39496)Jen Herting1-0/+27
2023-08-18[py-openmim] Beginning work (#39494)Jen Herting1-0/+26
2023-08-18[py-confection] new package (#39491)Jen Herting1-0/+21
2023-08-18py-multiqc: add 1.15, correct py-matplotlib dependency (#39509)George Young1-1/+2
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-08-18py-markdown-it-py: add linkify variant and v2.2.0 (#39492)Jen Herting1-0/+6
* [py-markdown-it-py] added linkify variant * [py-markdown-it-py] added version 2.2.0
2023-08-18fortrilinos: release 2.3.0 compatible with trilinos@14 (#39500)Seth R. Johnson1-3/+5
* fortrilinos: release 2.3.0 compatible with trilinos@14.0
2023-08-18New: py-alpaca-farm, py-alpaca-eval, py-tiktoken; Updated: py-accerlate, ↵Benjamin Meyers5-0/+102
py-transformers (#39432)
2023-08-18WarpX 23.08 (#39407)Axel Huebl3-13/+16
* WarpX 23.08 Update WarpX and related Python packages to the lastest releases. * fix style --------- Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-08-18Fix Spack freeze on install child process unexpected exit (#39015)Jordan Galby1-8/+27
* Fix spack frozen on child process defunct * Rename parent/child pipe to read/write to emphasize non-duplex mode
2023-08-17Updating the versions of available tarballs and adding an eigen3 variant as ↵Vijay M1-14/+22
well (#39498)
2023-08-17`zlib-api`: use `zlib-ng +compat` by default (#39358)Harmen Stoppels2-1/+4
In the HPC package manager, we want the fastest `zlib` implementation by default. `zlib-ng` is up to 4x faster than stock `zlib`, and it can do things like take advantage of AVX-512 instructions. This PR makes `zlib-ng` the default `zlib-api` provider (`zlib-api` was introduced earlier, in #37372). As far as I can see, the only issues you can encounter are: 1. Build issues with packages that heavily rely on `zlib` internals. In Gitlab CI only one out of hundreds of packages had that issue (it extended zlib with deflate stuff, and used its own copy of zlib sources). 2. Packages that like to detect `zlib-ng` separately and rely on `zlib-ng` internals. The only issue I've found with this among the hundreds of packages built in CI is `perl` trying to report more specific zlib-ng version details, and relied on some internals that got refactored. But yeah... that warrants a patch / conflict and is nothing special. At runtime, you cannot really have any issues, given that zlib and zlib-ng export the exact same symbols (and zlib-ng tests this in their CI). You can't really have issues with externals when using zlib-ng either. The only type of issue is when system zlib is rather new, and not marked as external; if another external uses new symbols, and Spack builds an older zlib/zlib-ng, then the external might not find the new symbols. But this is a configuration issue, and it's not an issue caused by zlib-ng, as the same would happen with older Spack zlib. * zlib-api: use zlib-ng +compat by default * make a trivial change to zlib-ng to trigger a rebuild * add `haampie` as maintainer
2023-08-17py-flake8: bump including deps (#39426)Harmen Stoppels3-0/+8
2023-08-17zig: add v0.11.0 (#39484)Massimiliano Culpo1-0/+2
2023-08-17ASP-based solver: optimize key to intermediate dicts (#39471)Massimiliano Culpo1-8/+15
Computing str(spec) is faster than computing hash(spec), and since all the abstract specs we deal with come from user configuration they cannot cover DAG structures that are not captured by str() but are captured by hash()
2023-08-17boost %oneapi: add cxxflags -Wno-error=enum-constexpr-conversion (#39477)eugeneswalker1-0/+6
2023-08-17Bump mypy from 1.5.0 to 1.5.1 in /lib/spack/docs (#39478)dependabot[bot]1-1/+1
Bumps [mypy](https://github.com/python/mypy) from 1.5.0 to 1.5.1. - [Commits](https://github.com/python/mypy/compare/v1.5.0...v1.5.1) --- updated-dependencies: - dependency-name: mypy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-17gmsh %oneapi: add cflag: -Wno-error=implicit-function-declaration (#39476)eugeneswalker1-0/+6
2023-08-17py-ruamel-yaml-clib %oneapi: -Wno-error=incompatible-function-pointer-types ↵eugeneswalker1-0/+6
(#39480)
2023-08-17sz %oneapi: add cflag=-Wno-error=implicit-function-declaration (#39467)eugeneswalker1-0/+6
2023-08-17kokkos: use 'when' instead of 'conflicts' for CUDA variants (#39463)Seth R. Johnson1-19/+12
2023-08-17silo %oneapi: add cflags: -Wno-error=int, -Wno-error=int-conversion (#39475)eugeneswalker1-0/+3
2023-08-17py-matplotlib %oneapi: add cxxflags=-Wno-error=register (#39469)eugeneswalker1-0/+6
2023-08-17py-deepspeed: add new package (#39427)Adam J. Stewart1-0/+32
2023-08-17snappy: patch and conflict for %nvhpc (#39063)Sergey Kosukhin1-0/+15
2023-08-17botan: version 3 requires newer GCC (#39450)Martin Aumüller1-0/+2
e.g. 3.1.1 produces this during configuration when trying to install: ERROR: This version of Botan requires at least gcc 11.0
2023-08-17py-setuptools: document Python 3.12 support (#39449)Adam J. Stewart1-0/+5
2023-08-17Add debugging statements to file search (#39121)Peter Scheibel1-2/+7
Co-authored-by: Scheibel <scheibel1@ml-9983616.the-lab.llnl.gov>
2023-08-17py-lightning: add v2.0.7 (#39468)Adam J. Stewart1-1/+3
2023-08-17Delay abstract hashes lookup (#39251)Harmen Stoppels7-68/+92
Delay lookup for abstract hashes until concretization time, instead of until Spec comparison. This has a few advantages: 1. `satisfies` / `intersects` etc don't always know where to resolve the abstract hash (in some cases it's wrong to look in the current env, db, buildcache, ...). Better to let the call site dictate it. 2. Allows search by abstract hash without triggering a database lookup, causing quadratic complexity issues (accidental nested loop during search) 3. Simplifies queries against the buildcache, they can now use Spec instances instead of strings. The rules are straightforward: 1. a satisfies b when b's hash is prefix of a's hash 2. a intersects b when either a's or b's hash is a prefix of b's or a's hash respectively
2023-08-16py-numcodecs %oneapi: add cflags -Wno-error=implicit-function-declaration ↵eugeneswalker1-0/+6
(#39454)
2023-08-16pruners-ninja cflags: -Wno-error=implicit-function-declaration (#39452)eugeneswalker1-0/+6
2023-08-16amrex+sycl: restructure constraint on %oneapi (#39451)eugeneswalker2-2/+3