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2021-10-04py-templateflow: add new package (#26458)Manuela Kuhn1-0/+23
2021-10-04Fix NonVirtualInHierarchyError message format (#26008)Dylan Simon1-1/+1
2021-10-04hdf5: allow implicit functions on apple-clang (#26409)Seth R. Johnson1-7/+7
Work around issues in older hdf5 build and overzealous build flags: ``` >> 1420 /var/folders/j4/fznvdyhx4875h6fhkqjn2kdr4jvyqd/T/9te/spack-stage/spack-stage-hdf5-1.10.4-feyl6tz6hpx5kl7m33avpuacwje2ubul/spack-src/src/H5Odeprec.c:141:8: error: implicit decl aration of function 'H5CX_set_apl' is invalid in C99 [-Werror,-Wimplicit-function-declaration] ```
2021-10-04python: correctly disable ~tkinter when @3.8 (#26365)Seth R. Johnson2-0/+15
The older patch does not apply so the build ends up failing: ``` 1539 In file included from /private/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-python-3.8.11 -6jyb6sxztfs6fw26xdbc3ktmbtut3ypr/spack-src/Modules/_tkinter.c:48: >> 1540 /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/tk.h:86:11: f atal error: 'X11/Xlib.h' file not found 1541 # include <X11/Xlib.h> 1542 ^~~~~~~~~~~~ 1543 1 error generated. ```
2021-10-04Update byacc (#25837)iarspider1-3/+4
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-10-04papi: new variants rocm and rocm_smi (#26214)G-Ragghianti1-6/+27
2021-10-04git-annex: add 8.20210804 for amd64 (#26449)Manuela Kuhn1-2/+11
2021-10-04py-pockets: add new package (#26452)Manuela Kuhn1-0/+18
2021-10-04Build ppc64le docker images (#26442)Massimiliano Culpo4-10/+37
* Update archspec * Add ppc64le to docker images
2021-10-04Update Spec.full_hash docstring (#26456)Massimiliano Culpo1-4/+1
The docstring is outdated since #21735 when the build hash has been included in the full hash.
2021-10-04FEniCSx: fix CMake root directory and dependency versions (#26445)Garth N. Wells3-6/+7
2021-10-04py-seaborn: add v0.11.2 (#26447)Manuela Kuhn1-0/+1
2021-10-04py-transforms3d: add new package (#26448)Manuela Kuhn1-0/+17
2021-10-04ocaml: add v4.13.1 (#26453)Joseph Wang1-1/+1
This is needed in order to make it work with glibc-2.34
2021-10-03ArborX: Explicitly set path to Kokkos (#26347)Daniel Arndt1-5/+4
* Explicitly set path to Kokkos for ArborX testing * Improve formatting * Update var/spack/repos/builtin/packages/arborx/package.py Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> * Remove blank line Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2021-10-03source-highlight: add gcc11 patch (#26412)Hector1-1/+6
2021-10-03PICSAR: added support for GCC >10.0 and arm compiler (#24927)Lorién López Villellas1-0/+8
* -fallow-argument-mismatch flag added when compiling with GCC to avoid a compilation error when using a GCC version > 10.0. Co-authored-by: Haz99 <jsalamerosanz@gmail.com> * Filtered every occurrence of "!$OMP SIMD SAFELEN(LVEC2)" when compiling with nvhcp to avoid a compilation error. Co-authored-by: Haz99 <jsalamerosanz@gmail.com> * Line with more than 80 characters split into multiple lines. Co-authored-by: Haz99 <jsalamerosanz@gmail.com>
2021-10-03Fix JSONDecodeError when using compiler modules (#25624)Jordan Galby2-2/+2
When using modules for compiler (and/or external package), if a package's `setup_[dependent_]build_environment` sets `PYTHONHOME`, it can influence the python subprocess executed to gather module information. The error seen was: ``` json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0) ``` But the actual hidden error happened in the `python -c 'import json...'` subprocess, which made it return an empty string as json: ``` ModuleNotFoundError: No module named 'encodings' ``` This fix uses `python -E` to ignore `PYTHONHOME` and `PYTHONPATH`. Should be safe here because the python subprocess code only use packages built-in python. The python subprocess in `environment.py` was also patched to be safe and consistent.
2021-10-03Remove .99 from version ranges (#26422)Harmen Stoppels606-1800/+1800
In most cases, .99 can be omitted thanks to #26402 .
2021-10-03DiHydrogen: Specify required NVSHMEM variants (#26384)Tim Moon1-1/+2
2021-10-03chombo: several build fixes: csh, space regex and install (#26424)Bernhard Kaindl1-21/+32
See description of the the PR for details on the changes.
2021-10-03bison: new versions 3.8:3.8.2 (#26439)Harmen Stoppels1-0/+3
2021-10-03form: use version tarballs, fix and enable gmp and zlib variants (#26425)Takahiro Ueda1-14/+11
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com> Co-authored-by: iarspider <iarspider@gmail.com>
2021-10-03meson: add 0.59.2 (#26430)Michael Kuhn1-0/+1
2021-10-03openblas: add 0.3.18 (#26429)Michael Kuhn1-0/+1
2021-10-03py-svgutils: new package (#26437)Manuela Kuhn1-0/+18
2021-10-03p4est: bump/update to 2.8 (#26081)Marc Fehling1-1/+2
2021-10-02py-packaging: bump version to 21.0 (#26436)Manuela Kuhn1-0/+3
2021-10-02py-attrs: bump version to 21.2.0 (#26435)Manuela Kuhn1-0/+2
2021-10-03py-nitransforms: new package (#26434)Manuela Kuhn1-0/+26
2021-10-03podio: add supported CMAKE_BUILD_TYPE values (#26432)Wouter Deconinck1-1/+1
2021-10-03py-pybids: bump version to 0.13.2 (#26433)Manuela Kuhn1-0/+1
2021-10-03atmi: replace /usr/bin/rsync with depends_on rsync (#26353)Sreenivasa Murthy Kolam2-0/+71
2021-10-02py-ipyvtk-simple: new package (#26431)Manuela Kuhn1-0/+20
2021-10-02damaris: bump version to 1.5.0, add variant examples (#26220)Josh Bowden1-8/+12
2021-10-02py-ipycanvas: new package (#26426)Manuela Kuhn1-0/+23
2021-10-02fltk: new version 1.3.7, new variant xft (#26423)Olivier Cessenat1-0/+14
2021-10-02py-ipyevents: add new package (#26427)Manuela Kuhn1-0/+21
2021-10-02cddlib: use github URLs and bump version (#26315)Robert Romero1-10/+11
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-10-02amrex: bump version to 21.10 (#26416)Weiqun Zhang1-1/+2
2021-10-02clingo-bootstrap: add a variant for static libstdc++ (#26421)Massimiliano Culpo1-4/+10
2021-10-02py-pytest-random-order: new package - plugin for py-pytest. (#26413)Mihael Hategan1-0/+24
2021-10-02Add hypre release 2.23.0 (#26418)Rob Falgout1-0/+1
2021-10-02ucx: add version 1.11.2 (#26417)Howard Pritchard1-0/+1
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2021-10-01New versions: geant4@10.7.2, geant4-data@10.7.2 (#25449)Wouter Deconinck2-0/+3
* [geant4] new version 10.7.2 * [geant4-data] new version 10.7.2
2021-10-01Added py-typeguard package. (#26411)Mihael Hategan2-0/+48
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-10-01Simplify setup_package in build environment (#26070)Harmen Stoppels1-29/+22
* Remove redundant preserve environment code in build environment * Remove fix for a bug in a module See https://github.com/spack/spack/issues/3153#issuecomment-280460041, this shouldn't be part of core spack. * Don't module unload cray-libsci on all platforms
2021-10-01Fix error message when test throws AttributeError (#25895)Cory Bloor1-4/+6
Narrow the scope of the try/except block, to avoid a misleading error message if fn() throws an AttributeError.
2021-10-01Added py-sqlalchemy-stubs package. (#26414)Mihael Hategan1-0/+20
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-10-01axel(download manager): fix build, bump version (#26140)bernhardkaindl1-9/+6