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2016-10-30configuration file for modules : fixed enable keyword (#2176)Massimiliano Culpo4-74/+10
- enable keyword works again - test/modules.py : proper clean-up after tests
2016-10-30updated gtk and gobject dependences (#2126)Gregory Lee2-0/+3
2016-10-29Do not check directory layout for external packages (#2172)Barry Smith1-1/+1
External packages do not have an spec.yaml file so don't check for it. Without this change any time a package depends on an external package when the new package is installed you will get the error Install prefix exists but contains no spec.yaml This problem has also haunted me since I started using Spack since PETSc depends on Python and I used an external python but fortunately it was relatively easy to debug once I could reproduce it at will. Funded-by: IDEAS Project: IDEAS/xSDK Time: 1 hour
2016-10-29Import dso_suffix from spack.build_environment in abi.py (#2174)Matthew Scott Krafczyk1-0/+1
Fixes #1845
2016-10-29Update license directory for intel-paralel-studio (#2163)Adam J. Stewart1-6/+15
2016-10-29Use Spec.format for token substitution in modules (#1848)scheibelp3-65/+87
This replaces a custom token-based substitution format with calls to Spec.format in modules.py This also resolves a couple issues: - LmodModules set configuration globally instead of in its initializer which meant test-specific configuration was not applied - Added support for setting hash_length=0 for LmodModules. This only affects the module filename and not the directory names for the hierarchy tokens in the path. This includes an additional unit test.
2016-10-28Update and Clean Up the Visit and VTK Packages (#2167)Joseph Ciurej2-62/+69
* Made some refactoring improvements to the 'visit' and 'vtk' packages. * Added a small fix for the 'vtk' package when building with 'qt+webkit'.
2016-10-27Fix rpath linking for NAG, add documentation on setup (#2142)Adam J. Stewart3-27/+57
2016-10-27Add latest version of Intel Parallel Studio XE (#2151)Adam J. Stewart1-15/+47
2016-10-26Remove support for deprecated package. See also #2085 and #2086 (#2090)Elizabeth Fischer1-1/+0
2016-10-26Get Trilinos 12.6.2 to build with Intel compilers and spack (#2102)Barry Smith1-8/+17
Funded-by: IDEAS Project: IDEAS/xSDK Time: 2 hours
2016-10-26Fix typo: _choiches -> _choices (#2127)George Hartzell1-1/+1
The breaks `spack create`.
2016-10-26typo: vlaues -> values (#2147)George Hartzell1-1/+1
2016-10-26Removed documentation on false paths as per #2083 (#2146)Elizabeth Fischer2-40/+1
Removed documentation on false paths as per #2083
2016-10-26document recommended usage of system blas/lapack (#2081)Denis Davydov1-0/+35
* document recommended usage of system blas/lapack * update doc * minor * reword
2016-10-26ProcessError : now the exception is correctly pickled and passed across ↵Massimiliano Culpo2-11/+32
processes. (#2143)
2016-10-26libSplash: Add 1.5.0 Release (#2137)Axel Huebl1-0/+1
Add the latest release of libSplash, version 1.5.0.
2016-10-26spack install : added --log-format option (incorporates test-install ↵Massimiliano Culpo5-281/+268
command) (#2112) * spack install : added --log-format option (incorporates test-install command) fixes #1907 * qa : removed extra whitespace
2016-10-26require fortran for MPI providers to avoid delayed compiler errors (#1937)Denis Davydov3-18/+21
* openmpi: require fortran for now * mpich: requre fortran for now * mvapich2: require fortran for now * openmpi: flake8 fixes
2016-10-26Develop: Resolve issue 2070 with new depends_on clause in the openspeedshop ↵Jim Galarowicz1-1/+1
package file. (#2136) * Update the krell institute products to use the latest features of spack for building on cluster platforms. * Address travis error messages and resubmit the pull request. * Update the contents of openspeedshop package.py so it passes the flake8 tests. * Fix flake8 error-whitespack issue in mrnet package.py file. * Add updates based on spack reviewer feedback. * More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH. * More review related changes. Update MPIOption.append lines and take out xercesc references. * Create a base options function for common openspeedshop base cmake options to reduce redundencies. * Add libxml2+python depends on to get around issues with the libxml2 package file.
2016-10-26add a unit test for conretization with develop version (#2064)Denis Davydov2-0/+44
2016-10-26veclibfort: add new package (#2080)Denis Davydov1-0/+70
* veclibfort: add new package * veclibfort: add a small test
2016-10-25Add package for ant (#2133)George Hartzell1-0/+44
Add a package for ant, a java build tool.
2016-10-25Add package for maven (#2132)George Hartzell1-0/+41
Add a package that installed the pre-built maven distribution. I've given up, for now, on building maven from source. That processed stumbled on two points before I gave up: 1. It downloaded several hundred .{pop,jar} files and I despaired of figuring out some way of mirroring and checksumming them; and 2. It exploded complaining about too many unacceptable license files, which seems odd in its own source tree. Perhaps someone with more Java fu that I admit to can figure it out. In the meantime, this is useful.
2016-10-25filter system paths (#2083)Denis Davydov3-3/+62
* add filter_system_paths() * filter system paths in set_build_environment_variables() * two function: lib/inc + bin * reverse order in bin * fix order * minor * improvements of the code * more cleanup * alternative solution for filter_bins * fiddle base alalazo's approach * minor * minor
2016-10-25openblas: Fixes to get OpenBLAS to install with Intel compilers (#2101)Barry Smith2-0/+258
Funded-by: IDEAS Project: IDEAS/xSDK Time: 1 hour
2016-10-25Add latest versions of Flux prerequisites (#2108)Stephen Herbein2-1/+11
* libsodium: add latest versions, fix old versions older versions of libsodium were added to an "old" subdirectory * zeromq: add 4.1.4 prerequiste for the latest develop version of flux
2016-10-25pkg-config variant to use internal glib (#2104)Mayeul d'Avezac2-8/+12
Pkg-config depends on glib which depends on pkg-config. As a result, pkg-config used to build glib internally. However, this fails on Mac. Building pkg-config with an internal glib is now a variant, turned on by default, and required to build glib.
2016-10-25Find compatibility versions of GCC (#2099)Adam J. Stewart1-2/+3
2016-10-25Allow newer versions of GCC to compile older versions of GCC (#2107)Adam J. Stewart2-0/+139
* Add patch allowing GCC 6 to compile GCC 5 * Expand patch version range
2016-10-25Update cask to v0.8.1 (#2125)George Hartzell1-0/+2
2016-10-25Rename xpyb to py-xpyb (#2120)Adam J. Stewart1-1/+1
2016-10-25multimethod.py : calls functools.wraps before returning the correct method ↵Massimiliano Culpo1-1/+11
fixes #2118 (#2119)
2016-10-25Tells boost explictly about python libraries and headers (#2106)Mayeul d'Avezac1-3/+22
* Tells boost explictly about libraries and headers Ideally, bjam would determine the libraries and headers from the executable. But it doesn't. This rigs a best guess for python libraries and headers. * Move glob import to top of file * variable name change: alllibs --> all_libs * Use dso suffix rather than hard-coded string * Use only MAJOR.MINOR when setting up python in bjam
2016-10-25spack setup : fixed regression after #1186 (#2117)Massimiliano Culpo2-14/+32
2016-10-25gmp: fix a bug (#2114)Denis Davydov1-1/+1
2016-10-24Merge pull request #1186 from epfl-scitas/features/install_with_phasesTodd Gamblin26-682/+1252
do_install : allow for an arbitrary number of phases
2016-10-24Rename EditableMakefile to MakefilePackageTodd Gamblin3-5/+5
2016-10-24Bug Fix : Apply Compiler Flags Specified by Manual Compiler Configuration ↵Joseph Ciurej7-53/+126
(#1532) * Fixed a bug causing config-specified compiler flags to be ignored. Updated the compiler config so all flags are in a separate section. * Updated the documentation for the `compilers.yaml` file spec. * Implemented basic testing for the 'flags' section of compiler config. * Fixed a few minor problems with the manual compiler config documentation.
2016-10-24Typo: becuase -> because (#2110)George Hartzell1-1/+1
2016-10-24Get netlib-lapack to compile with Intel and add deprecated routines (#2103)Barry Smith1-1/+11
Funded-by: IDEAS Project: IDEAS/xSDK Time: .4 hours
2016-10-24Adds new versions to eigen (#2105)Mayeul d'Avezac1-3/+5
* Adds new versions to eigen * Reorder versions from oldest to newest
2016-10-24Small fix to docs. (#2092)Elizabeth Fischer1-1/+1
2016-10-24spack test : exits after ctrl+c fixes #2029 (#2082)Massimiliano Culpo2-15/+27
2016-10-23package.py : moved each specialized package to its own module filealalazo7-158/+331
2016-10-23spack setup : improved error messagealalazo1-4/+6
2016-10-23CMakePackage, AutotoolsPackage : added default behavior on checkalalazo4-10/+33
2016-10-23Merge branch 'develop' of https://github.com/LLNL/spack into ↵alalazo46-8450/+569
features/install_with_phases_rebase
2016-10-23spack.error : fixed pickling and representation to permit to pass FetchErrorsalalazo1-1/+12
2016-10-22mumps: Add support for Intel compiler and insure both lapack and blas… (#2076)Barry Smith1-3/+11
* mumps: Add support for Intel compiler and insure both lapack and blas libraries are passed to the examples Likely it was not discoverged before that the examples require both lapack and blas libraries because it was tested with Openblas which is one large library containing everything. Funded-by: IDEAS Project: IDEAS/xSDK Time: .3 hours * flake8 fix.
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