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2019-09-16Add py-sortedcontainers package (#12826)Adam J. Stewart1-0/+18
2019-09-16Add py-weave package (#12828)Adam J. Stewart1-0/+24
2019-09-16Add py-soupsieve package (#12827)Adam J. Stewart1-0/+18
2019-09-16Relax Python version constraints on py-html5lib (#12811)Adam J. Stewart1-2/+2
2019-09-16xdmf3: new package (#12778)Chuck Atkins1-0/+44
2019-09-14qt: Fix build with GCC9 for version 4 (#12832)Ruben Di Battista2-0/+68
* qt: Fix build w/ GCC9 for @4: * qt: Fix patch filename and qt version * Fix typo in patch name
2019-09-14flang: build on arm. (#12808)Toyohisa Kameyama1-0/+2
2019-09-13Fixes identified in ecp facilities hackathon fixes:Scott Wittenburg4-33/+21
- improve mirror git repo management - minio s3 implementation needs endpoint_url - Remove image key from rebuild-index job - Remove image, rely on tags instead
2019-09-13Implement an optional compiler bootstrapping phaseScott Wittenburg10-368/+711
2019-09-13Remove CombinatorialSpecSet in favor of environments + stacksScott Wittenburg10-721/+83
2019-09-13Add pre-ci job generation for a multi-repo setupScott Wittenburg2-0/+103
2019-09-13Refactor release-jobs cmd based on use of environments (no docker either)Scott Wittenburg4-310/+193
2019-09-13Add schema for new gitlab-ci and cdash additions to environmentScott Wittenburg4-0/+220
2019-09-13py-bleach package: add version 3.1.0 (#12814)Adam J. Stewart1-4/+5
2019-09-13py-cython package: fix --test (#12813)Adam J. Stewart1-1/+1
Fix bug in string conversion of "make_jobs"
2019-09-13py-emcee package: add version 2.2.1 (#12812)Adam J. Stewart1-1/+2
2019-09-13wcslib package: add version 6.4 (#12810)Adam J. Stewart1-1/+2
2019-09-13Add diamond dependencyGlenn P Johnson1-0/+1
2019-09-13Update braker packageGlenn P Johnson1-6/+33
- add version 2.1.4 - change url to github - add perl dependencies - new version has a new source layout - filter shebang to use spack perl
2019-09-13Fixes for augustus packageGlenn P Johnson1-13/+23
- add missing perl dependency - only filter Makefile if referred to dependency is in the spec - rewrite the shebang line of scripts to use spack perl - remove tabix dependency as tabix and bgzip are part of htslib
2019-09-13Update genemark-et packageGlenn P Johnson1-1/+19
- add version 4.46 - add missing perl dependencies - new version has different source layout - filter shebang to use spack perl
2019-09-13New package: py-pykwalify (#12540)Sinan1-0/+28
2019-09-13preCICE: added versions 1.6.0 and 1.6.1 (#12809)Frédéric Simonis1-0/+2
2019-09-13diamond: added version 0.9.25 (#12805)Glenn Johnson1-0/+1
2019-09-12New package: py-ruamel-yaml (#12543)Sinan1-0/+29
2019-09-12Singularity package: add version 3.4.0 (#12785)Owen Solberg2-3/+22
This version in combination with the included patch can install without root.
2019-09-12New package: cryptsetup (#12762)Owen Solberg2-0/+60
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-12add compilation option to sqlite (#12794)Sinan1-0/+5
* add compilation option to sqlite * rename variant * fix bug * re-rename variant
2019-09-12Update legion gasnet config (#12523)ktsai72-12/+32
2019-09-12BUG: recursively load modules with tcsh (#12664)Tyler Reddy1-1/+6
* for tcsh and csh, spack load -r package should now correctly load recursively instead of only loading the target package without any dependencies
2019-09-12py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795)Simo Tuomisto1-0/+2
2019-09-11fgsl: new version + fix for recent spack commit (#12790)brietzke1-0/+6
2019-09-11module parsing: make heuristic to get paths from modules more robust (#12693)Greg Becker2-36/+87
* module parsing: make heuristic to get paths from modules more robust * refactor module parsing
2019-09-11jsoncpp: new versions, support cxxstd variant. (#12780)Chris Green1-0/+20
2019-09-10create package popt (#12783)Owen Solberg1-0/+15
2019-09-10fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784)Jonas Lippuner1-5/+5
2019-09-10openmx: new package (#12768)Hironori-Yamaji1-0/+80
* openmx: new package * openmx: use copy method
2019-09-10cuda: New version 10.1.243 (#12777)Janne Blomqvist1-4/+14
* cuda: New version 10.1.243 Adds CUDA 10.1.243. The installer command-line arguments have slightly changed, hence in the install method the version needs to be inspected in order to give the correct arguments for the new installer. * cuda: Combine common command-line arguments The CUDA 10.1+ installer has slightly different command-line arguments than previous versions. Keep the common parts together and only split where they are different. * Make flake8 happy
2019-09-10py-atropos: new package (#12745)Owen Solberg1-0/+26
* create new package py-atropos * remove whitespace * make tqdm and pysam dependencies optional, exposed as variants
2019-09-10ccs-qcd: disable parallel builds (#12775)Hironori-Yamaji1-2/+2
2019-09-09packages service: fix docker build again (#12774)Axel Huebl1-1/+1
CD is hard.
2019-09-09packages service: fix docker build (#12773)Axel Huebl1-1/+1
The build instructions I cloned from did not work ;)
2019-09-09packages build: fix path to spack (#12772)Axel Huebl1-1/+4
Fix docker build for packages.spack.io
2019-09-09Fix CD: Packages Service First (#12764)Axel Huebl1-81/+2
* Fix CD: Packages Service First Build the packages.spack.io service images first, so they are guaranteed to be pushed even if further images fail to build. Fix the query to the `spack` script executed in later builds. * CD: Remove Spack Images Now done on Dockerhub.
2019-09-09update bbmap (#12721)xfzhao1-1/+6
* update bbmap * remove one extra comment line
2019-09-09Fix pkgconfig dependencies (#12714)Michael Kuhn3-3/+3
pkgconfig is the virtual dependency, pkg-config is an implementation.
2019-09-09Update py-bokeh: new version & dependencies" (#12724)brietzke1-9/+12
* update py-bokeh: new version & dependencies * Revert "update py-bokeh: new version & dependencies" This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f. * update py-bokeh: new version & dependencies * trigger travis-ci * adjust python dependency-type to br
2019-09-09New package: py-fsspec (#12725)brietzke1-0/+18
* update py-bokeh: new version & dependencies * Revert "update py-bokeh: new version & dependencies" This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f. * new package: py-fsspec: add package.py * trigger travis-ci * adjust python dependency-type to br
2019-09-09Paraview version (#12766)Dan Lipsa1-5/+10
* Update paraview * Paraview 5.6.2 provides only .xz (no .gz) * Add list_url and list_depth
2019-09-09clang: add another regex for version detection (#12769)Massimiliano Culpo2-0/+5
This is similar to #10191. The Ubuntu package for clang 8.0.0 displays a very unusual version string, and we need this new regex to detect it as just 8.0.0 Unit test have been complemented by the output that was failing detection.
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