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* ferret: use libx11 from spack
* ferret: use mpi library with or without fortran support
* ferret: add version 7.2
* ferret: no need to specify ~mpi
* ferret: creating symlinks may fail for external packages; set include/lib paths instead
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* use autoreconf to regenerate configure script and config.guess for
newer architectures
* Add perl build dependency for older versions. The required perl
version is constrained because the perl script uses syntax that
is deprecated in older versions
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- Fix a bug introdcued by removing parse_anonymous_spec()
- Conflicts' when specs are now *actually* anonymous, and the name of the
package is implicit, so we need to remember to add it back to error
messages.
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* Travis CI: The sudo tag is now deprecated in Travis
__sudo: required__ no longer is.
* Remove obsolete comment
__travis_wait__ can help with long-running processes.
* https://docs.travis-ci.com/user/common-build-problems/#build-times-out-because-no-output-was-received
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- We weren't previously printing stack traces on SystemExit or
KeyboardInterrupts.
- Either raise or print the stacktrace in these cases.
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Declare a conflict for TAU versions older than 2.28.1, that they
can't depend on libelf or libdwarf. The user can still install it
by specifying tau@2.24~libelf~libdwarf.
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- Add set -u to the setup-env.sh test script
- Refactor lines in setup-env.sh that tested potentially undefined
variables to use the `[ -z ${var+x} ]` construct
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- tests use a shell-script harness and test all Spack commands that
require special shell support.
- tests work in bash, zsh, and dash
- run setup-env.sh tests on macos and linux builds.
- we run them on macos and linux
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- replace use of [[ with [
- replace function foo { .. } with foo() { .. }
- wrap some long lines
- add lsof and /proc/fd magic so that we can find the sourced file even in dash
- only do the complicated shell checks in one place; test $_sp_shell
elsewhere.
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* py-stratify: vertical interpolation/stratification of atmos/ocean data
* py-stratify: download from pypi.io
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* py-scikit-image: include more dependencies
* py-scikit-image: limit some dependencies to recent versions
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* py-antlr4-python3-runtime: new package
* py-antlr4-python3-runtime: fix for flake8
* py-antlr4-python3-runtime: indent docstring
* py-antlr4-python3-runtime: clarify role of this package vs ANTLR in docstring
* py-antlr4-python3-runtime: remove whitespace at end of line
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The py-reportlab package includes binaries for easy_install and pip.
That blocks activation if py-setuptools and/or py-pip are installed.
This PR block the binaries from py-reportlab as easy_install and pip
should be installed with their respective packages.
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Version 2.4.6 did not require running autoreconf, so this only does
autoreconf for 2.4.2
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- There's too much information on our PRs, and the Travis test results
(which are arguably more important than coverage) get buried in
coverage information
- Remove coverage sub-categories, as you can browse codecov's file view
to see roughly the same thing
- show only project/patch on GitHub PRs.
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* py-cf-units: new package
* py-cf-units: download from pypi.io
* py-cf-units: include py-pytest-runner as build dep
* py-cf-units: remove empty build_args function
* py-cf-units: fix for flake8
* py-cf-units: indent docstring
* py-cf-units: remove excess spaces
* py-cf-units: list master branch ahead of numeric versions
* py-cf-units: remove extension keyword from version
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If R is provided by the system with a module (i.e. registered in
packages.yaml with a "module" entry) and has no discernible prefix,
this allows turbine to still make use of R.
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* py-pyke: automatic python program generator
* py-pyke: expand the package docstring
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* dep llvm if static analyzer
dep caliper if caliper
* fix typo
* adding variants for toggles
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GCC on aarch64 dose not support -m64. This patch removes the -m64
flag if target is aarch64.
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This PR corrects a problem with the opa-psm2 package. It was
installing headers into <prefix>/usr/include and libraries into
<prefix>/usr/lib instead of <prefix>/include and <prefix>/lib.
The extra level of usr/ subdirectories causes dependent packages
like libfabric to fail to build.
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The original packaging, with openfoam as a virtual and with
openfoam-com, openfoam-org and openfoam-extend as
providers, adds an obfuscation layer without any benefit.
- Rename `openfoam-com` to `openfoam`, and remove the
`openfoam` virtual package.
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- `parse_anonymous_spec()` is a vestige of the days when Spack didn't
support nameless specs. We don't need it anymore because now we can
write Spec() for a spec that will match anything, and satisfies()
semantics work properly for anonymous specs.
- Delete `parse_anonymous_spec()` and replace its uses with simple calls
to the Spec() constructor.
- make then handling of when='...' specs in directives more consistent.
- clean up Spec.__contains__()
- refactor directives and tests slightly to accommodate the change.
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- CNL OS previously used the *Cray PE* version to determine the OS
version. Cray does not synchronize PE and CLE releases; you can run
CLE7 with PrgEnv 6 (and NERSC currently does).
- Fix Spack's OS detection by using the cle-release file to detect the OS
version. This file is updated with every CLE OS release.
- Add some tests for our parsing logic
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* libmo-unpack: package to encode and decode UM fields
* py-mo-pack: python interface for libmo-unpack
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The python dependency specifies that 2.7 or 2.8 are allowed when in
fact it should specify a version range (anything between 2.7 and 2.8,
inclusive).
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Added a wrapperrpath variant to mpich that defaults to `True`.
Users can set this to `False` (e.g., spack install mpich~wrapperrpath) to
disable the wrapper RPATHs. This makes it easier to replacing an MPICH
installation in a container with an MPICH for the host system,
e.g., Cray MPICH with Shifter on Cori, Intel MPI, MVAPICH2, etc.
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
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Add the latest release of ADIOS2.
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* camellia: fix hdf5 dependency
* camellia: Add comment
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