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2022-08-15nlohmann-json: add v3.11.2 and make 'multiple_headers' the default (#31865)Florian Albrechtskirchinger1-1/+6
* nlohmann-json: add v3.11.2 * nlohmann-json: variant multiple_headers should be the default
2022-08-15CI/documentation: constrain pygments to avoid latest version (2.13.0) (#32163)Peter Scheibel1-0/+1
All PRs are failing the docs build on account of an error with pygments. These errors coincide with a new release of pygments (2.13.0) and restricting to < 2.13 allows the doc tests to pass, so this commit enforces that constraint for the docs build. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-15Check that no reserved names are overridden by package recipes (#32092)Massimiliano Culpo1-0/+40
A few attribute in packages are meant to be reserved for Spack internal use. This audit checks packages to ensure none of these attributes are overridden. - [x] add additional audit check
2022-08-15llvm: fix ncurses/terminfo builds (#32028)Andrew W Elble1-1/+6
* llvm: fix ncurses/terminfo builds * use suggestion * formatting
2022-08-15tophat: fixing build issue with newer automakes (#32082)snehring1-0/+4
2022-08-15netpbm: new super stable version 10.73.40 (#32087)Olivier Cessenat1-0/+1
2022-08-15MFEM: Add an exceptions variant. (#32096)Eric Brugger1-0/+2
2022-08-15bridger: adding ncurses dep (#32103)snehring1-0/+1
2022-08-15quantum-espresso: adding some missing build deps (#32109)snehring1-0/+2
2022-08-15fix oce build failure due to change of intel-tbb default version (#32101)Satish Balay1-0/+2
In file included from /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.cxx:17: /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx: In static member function 'static void OSD_Parallel::ForEach(InputIterator, InputIterator, const Functor&, Standard_Boolean)': /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:223:18: error: 'captured_exception' in namespace 'tbb' does not name a type 223 | catch ( tbb::captured_exception& anException ) | ^~~~~~~~~~~~~~~~~~ /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:225:38: error: 'anException' was not declared in this scope 225 | Standard_NotImplemented::Raise(anException.what()); | ^~~~~~~~~~~ /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx: In static member function 'static void OSD_Parallel::For(Standard_Integer, Standard_Integer, const Functor&, Standard_Boolean)': /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:272:18: error: 'captured_exception' in namespace 'tbb' does not name a type 272 | catch ( tbb::captured_exception& anException ) | ^~~~~~~~~~~~~~~~~~ /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:274:38: error: 'anException' was not declared in this scope 274 | Standard_NotImplemented::Raise(anException.what()); | ^~~~~~~~~~~
2022-08-15unifyfs %oneapi: add CFLAGS=-Wno-unused-function to build environment (#32107)eugeneswalker2-2/+3
2022-08-15VTK-h: Patch VTK-h to build +shared+cuda (#32104)kwryankrattiger1-0/+2
2022-08-15swig: new version 4.1.dev1-fortran (#32135)Seth R. Johnson1-1/+6
2022-08-15e4s ci: enable trilinos@13.4.0 +cuda build, issues resolved (#32124)eugeneswalker1-1/+1
2022-08-15e4s ci: enable hpctoolkit +rocm (#32126)eugeneswalker1-1/+1
2022-08-15root: set CLING_STANDARD_PCH as in thisroot.sh (#32095)Valentin Volkl1-0/+3
* root: set CLING_STANDARD_PCH as in thisroot.sh * root: also set CPPYY_API_PATH
2022-08-15curl: --with-pkg=prefix instead of --with-pkg (#31816)Harmen Stoppels1-13/+5
2022-08-15gaudi: new version 36.7 (#32116)Wouter Deconinck1-0/+1
Small bugfix release, https://gitlab.cern.ch/gaudi/Gaudi/-/compare/v36r6...v36r7. No changes to recipe needed.
2022-08-15py-numpy: add v1.23.2 (#32139)Adam J. Stewart1-0/+1
2022-08-14flex %oneapi: add -Wno-implicit-function-declaration (#32073)eugeneswalker1-0/+8
2022-08-14arpack-ng %oneapi: add -Wno-implicit-function-declaration (#32080)eugeneswalker1-0/+8
2022-08-14mpifileutils %oneapi: add -Wno-implicit-function-declaration (#32067)eugeneswalker1-0/+8
2022-08-14openblas@0.3.20 %openblas: -Wno-implicit-function-declaration (#32065)eugeneswalker1-0/+8
2022-08-14hdf5 flag_handler for icx: add -Wno-implicit-function-declaration (#32066)eugeneswalker1-2/+2
2022-08-14superlu-dist %oneapi: add -Wno-implicit-function-declaration (#32081)eugeneswalker1-0/+2
2022-08-14root: fix setup_dependent_build_environment regression (#32115)Wouter Deconinck1-1/+1
`setup_dependent_build_environment(self, env, dependent_spec)` does not have a variable `spec`. This causes several issues right now: ```console ==> Installing gaudi-36.6-cjjrpjwpcqrtojyrdqml3jpzkbn55hpb ==> No binary for gaudi-36.6-cjjrpjwpcqrtojyrdqml3jpzkbn55hpb found: installing from source ==> Error: NameError: name 'spec' is not defined /home/wdconinc/git/spack/var/spack/repos/builtin/packages/root/package.py:614, in setup_dependent_build_environment: 611 env.prepend_path("ROOT_INCLUDE_PATH", dependent_spec.prefix.include) 612 if "+rpath" not in self.spec: 613 env.prepend_path("LD_LIBRARY_PATH", self.prefix.lib.root) >> 614 if "platform=darwin" in spec: 615 # Newer deployment targets cause fatal errors in rootcling 616 env.unset("MACOSX_DEPLOYMENT_TARGET") ```
2022-08-13Add new dependencies for rocm variant for py-torch recipe (#32100)renjithravindrankannath1-1/+3
* Cmake module path updated for ROCm 5.2 * nccl is already set below for PyTorch 1.6+ * Threadpool is set below for PyTorch 1.6+
2022-08-12e4s oneapi ci: enable hpx due to merged PR #32097 (#32117)eugeneswalker1-2/+1
2022-08-12boost@1.76:1.79 %oneapi: patch according to Intel guide for building Boost ↵eugeneswalker2-1/+1
(#32097)
2022-08-12e4s oneapi: build tau %oneapi ^binutils%gcc (#32106)eugeneswalker1-1/+1
2022-08-12do not require docs (py-docutils) if not +docs (#32099)Vanessasaurus1-2/+2
Signed-off-by: vsoch <vsoch@users.noreply.github.com> Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2022-08-12gitlab ci: Make sure PR pipelines can push to buildcache (#32014)Scott Wittenburg1-0/+1
On PR pipelines we need to override the buildcache destination to point to the "spack-binaries-prs" bucket, otherwise, those pipelines try to push to the default mirror in a bucket for which they don't have write permission.
2022-08-12Use llvm13-thread.patch for all compilers when building llvm (#31661)Mikael Simberg2-1/+3
2022-08-12perl-fth: add v0.527 (#32032)Olivier Cessenat1-0/+1
2022-08-12keepassxc: add 'docs' variant (#32049)Olivier Cessenat1-5/+4
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-08-12rocm: add v5.2 for the entire stack (#31591)renjithravindrankannath58-165/+582
2022-08-11VTK-m: Constrain gcc compiler after 11 updates. (#32059)kwryankrattiger1-0/+1
2022-08-11Fix performance regression with `spack mirror create --all` (#32005)Massimiliano Culpo14-184/+416
This PR fixes the performance regression reported in #31985 and a few other issues found while refactoring the spack mirror create command. Modifications: * (Primary) Do not require concretization for `spack mirror create --all` * Forbid using --versions-per-spec together with --all * Fixed a few issues when reading specs from input file (specs were not concretized, command would fail when trying to mirror dependencies) * Fix issue with default directory for spack mirror create not being canonicalized * Add more unit tests to poke spack mirror create * Skip externals also when mirroring environments * Changed slightly the wording for reporting (it was mentioning "Successfully created" even in presence of errors) * Fix issue with colify (was not called properly during error reporting)
2022-08-11New package: py-pynndescent (#32076)Jen Herting1-0/+23
* [py-pynndescent] New package * [py-pynndescent] Removed white space * [py-pynndescent] fixed dependencies * [py-pynndescent] flake8 * [py-pynndescent] Import update Co-authored-by: James A Zilberman <jazrc@rit.edu>
2022-08-11CachedCMakePackage: Port over logic from CMake build system for ldlibs and ↵Chris White1-5/+26
ldflags (#31750) * port over logic from cmake build system for ldlibs and ldflags * follow new style standards * escape quotes * escape quotes * nevermind going back
2022-08-11petsc, py-petsc4py: add 3.17.4 (#32071)Satish Balay2-0/+2
2022-08-11aml: add v0.2, cuda,opencl,hip support (#30701)Swann Perarnau1-35/+97
- [x] Add release v0.2 of the AML package, deprecate v0.1, and add support for OpenCL, HIP, and CUDA variants of the library. Also update repo and release URL, as the previous one is not accessible anymore. - [x] aml: add oneapi-level-zero support - [x] Change openmp flags to force compatibility when compiling with intel-oneapi compilers.
2022-08-11pasta: updating to latest version (#32077)snehring1-2/+5
* pasta: updating to latest version * pasta: fixing missing 's' from maintainers
2022-08-11podio, edm4hep: new versions (#32063)Wouter Deconinck2-0/+3
* podio, edm4hep: new versions * edm4hep: new version * edm4hep: @0.6: depends_on podio@0.15:
2022-08-11release cdo-2.0.6 (#32069)Brian Spilner1-0/+5
2022-08-11pwgen: add new package (#32053)Olivier Cessenat1-0/+20
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-08-11hwloc: add v2.8.0 (#32042)Erik Schnetter1-0/+1
2022-08-11Don't set `LD_LIBRARY_PATH` by default on Linux (#28354)Harmen Stoppels7-31/+32
`LD_LIBRARY_PATH` can break system executables (e.g., when an enviornment is loaded) and isn't necessary thanks to `RPATH`s. Packages that require `LD_LIBRARY_PATH` can set this in `setup_run_environment`. - [x] Prefix inspections no longer set `LD_LIBRARY_PATH` by default - [x] Document changes and workarounds for people who want `LD_LIBRARY_PATH`
2022-08-11cmake: add v3.23.3 and v3.22.6 (#31926)Harmen Stoppels1-0/+2
2022-08-11Pin tbb version for salmon & dyninst (#32026)Robert Cohn3-10/+16
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