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2016-08-02spack create should use setup_py() instead of python()Adam J. Stewart1-1/+1
2016-08-02Merge pull request #1339 from hartzell/features/add-perlbecker331-0/+75
Add perl package
2016-08-02Merge pull request #1423 from glennpj/fix_urlbecker331-1/+2
Move archive_version setting to if block
2016-08-02Remove accidentally committed cabal-install bitsGeorge Hartzell2-62/+0
2016-08-02Merge pull request #1243 from davydden/pkg/atlas_urlsbecker333-9/+120
atlas: fix urls and shared libs
2016-08-02Move archive_version setting to if blockGlenn Johnson1-1/+2
The archive_version variable should only get set if versions will be checked and that is only if there is a list_url in the package file. For VCS repos setting the variable triggers an error from web.py as it parses the default_fetcher object. This should fix #1422.
2016-08-02Merge pull request #864 from davydden/kdiff3becker332-2/+46
kdiff3: initial version of the package
2016-08-02Merge pull request #1360 from glennpj/pysetuptoolsdepbecker334-3/+10
Add py-setuptools dependencies to packages
2016-08-02Merge pull request #1354 from ↵becker334-5/+114
paulhopkins/bugfix/preferred_variants_do_not_recognise_-variant Bugfix/preferred variants do not recognise -variant
2016-08-02Remove local copy of cpanm installerGeorge Hartzell3-1075/+62
This is handled as a resource in the package now.
2016-08-02Merge pull request #1373 from hartzell/bug/update-several-r-packagesbecker333-3/+6
Update several R packages (r-shiny prereqs)
2016-08-02Add previous versions back into packageGeorge Hartzell3-0/+3
Following the advice of @glennpj, added the old versions back into the packages. I can install the current packages and the previous packages.
2016-08-02Touch up variant commentGeorge Hartzell1-1/+1
2016-08-02Use "resource" machinery to manage cpanm tarballGeorge Hartzell1-8/+13
Use the resource machinery to fetch/cache/unpack/... the App::cpanminus tarball. - this hardcodes the version, I can't figure out how to use a variant to hold/set the value and access it in the resource(). - change up the install to use the `with working_dir()` meme.
2016-08-02Add the std spack header to perl/package.pyGeorge Hartzell1-0/+24
Stole the example header from antlr/package.py, included it at the top of perl/package.py.
2016-08-02Make running perl's tests conditionalGeorge Hartzell1-1/+2
Make running perl's tests conditional, one must now specify the `--run-tests` flag to the `spack install` command in order to run the tests. On one system (8 core, 16GB Digital Ocean Droplet), installing without tests takes 3 minutes, with tests takes 16 minutes.
2016-08-02Make the cpanm version a variantGeorge Hartzell1-2/+5
Rather than hard-coding the verison of `cpanm` that's [optionally] installed into the core, make it a variant with a default value of '1.7042'. Also discovered that `prefix + 'bin'` is the same as `prefix.bin`, so embetter that bit of code.
2016-08-02Add perl packageGeorge Hartzell2-0/+1117
Add perl package, based on [work by justintoo](https://github.com/LLNL/spack/pull/105). He had too many things pulled into that pull request, this just adds a perl package. Support the current releases on the past three minor branches. Run perl's tests before installing. Install cpanm into the core (makes building on top of this perl *much* simpler). Controlled by a variant.
2016-08-02Update several R packages (r-shiny prereqs)George Hartzell3-6/+6
r-jsonlite 0.0.21 -> 1.0 r-mime 0.4 -> 0.5 rcpp 0.12.5 -> 0.12.6 CRAN is funny. The older versions of these packages are still available in package specific directories but the current version is not there, so I don't see any way to make the older versions work.
2016-08-02Fix flake8 issues.Glenn Johnson2-3/+6
2016-08-02kdiff3: add license blockDenis Davydov1-0/+24
2016-08-02atlas: revert to lapack 3.5.0Denis Davydov1-2/+4
2016-08-02atlas: flake8 fixesDenis Davydov1-5/+5
2016-08-02atlas: add install_testDenis Davydov3-0/+77
2016-08-02atlas: set (blas|lapack)_shared_libDenis Davydov1-0/+13
2016-08-02atlas: fix shared libs; set compilersDenis Davydov1-2/+21
2016-08-02atlas: fix urls and use lapack 3.6.0Denis Davydov1-4/+4
2016-08-02libxau: mark pkg-config as build-type dependencyDenis Davydov1-1/+1
2016-08-02kdiff3: initial version of the packageDenis Davydov1-0/+20
2016-08-02libxau: add missing dependencyDenis Davydov1-2/+2
2016-08-01Merge pull request #1419 from LLNL/bugfix-compiler-error-messagebecker331-4/+8
Bugfix compiler error message
2016-08-01fixed flake8 errorsGregory Becker1-2/+4
2016-08-01further improved error messageGregory Becker1-4/+6
2016-08-01changed error raised in concretize compiler to provide better error messageGregory Becker1-1/+1
2016-08-01Merge pull request #1417 from LLNL/features/combined-cray-platform-cleanupbecker332-74/+2
Removed vestigial cray_xc platform in favor of combined cray platform
2016-08-01fixed architecture testGregory Becker1-2/+2
2016-08-01Merge pull request #1418 from mamelara/bugfix/add_importbecker331-1/+1
Add import statement
2016-08-01Add import statementMario Melara1-1/+1
Add missing import statement for join_path
2016-08-01Removed vestigial cray_xc platform in favor of combined cray platformGregory Becker1-72/+0
2016-08-01Merge pull request #1376 from mpbelhorn/olcf/unified_cray_platformbecker333-9/+133
Olcf/unified cray platform
2016-08-01Fixes Flake8 indentation errors.Matt Belhorn1-3/+3
2016-08-01Prefers `bash` over `sh`.Matt Belhorn1-1/+1
Assuming a bash interactive environment will be correctly formed on login, we should prefer to probe the environment using a shell that reports itself as `bash` instead of `sh` which may not source files that set the environment modules in statements like: ``` case "$is" in bash) test -s /etc/bash.bashrc.local && . /etc/bash.bashrc.local ;; ksh) test -s /etc/ksh.kshrc.local && . /etc/ksh.kshrc.local ;; zsh) test -s /etc/zsh.zshrc.local && . /etc/zsh.zshrc.local ;; ash) test -s /etc/ash.ashrc.local && . /etc/ash.ashrc.local esac test -s /etc/sh.shrc.local && . /etc/sh.shrc.local ```
2016-08-01Merge pull request #1414 from adamjstewart/fixes/filter_filebecker331-7/+9
Fix backup=True for filter_file
2016-08-01Replaces bash-ism `source` for POSIX-compliant `.`Matt Belhorn1-1/+1
Change is made in order to use `/bin/sh` on systems where `/bin/sh` is not simply an alias for `/bin/bash --norc`.
2016-08-01Merge pull request #1343 from glennpj/r_unfilterbecker331-15/+29
R extension dependencies with compiler wrapper
2016-08-01Merge pull request #1357 from hartzell/patch-6becker331-1/+1
Fix doc for install_tree (cut/paste error)
2016-08-01Merge pull request #1234 from mwilliammyers/package-opencvbecker331-21/+156
Update opencv package
2016-08-01Merge pull request #1348 from glennpj/rcurlbecker331-1/+2
r-curl update and changed remote archive
2016-08-01Merge pull request #1346 from glennpj/url_list_fetchbecker331-41/+71
Url list fetch
2016-08-01Merge pull request #1381 from davydden/pkg/mkl_linuxbecker333-8/+23
MKL linux fixes