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2023-03-17boost: add patch for 1.81.0 (#35964)Valentin Volkl2-0/+35
2023-03-17nwchem: add v7.2.0 (#36061)Edoardo Aprà1-3/+9
2023-03-17Mitigation for GitVersion bug when no `=reference` is given (#36159)Massimiliano Culpo2-1/+39
* ASP-based solver: use satisfies instead of intersects They are semantically equivalent for concrete versions, but the GitVersion.intersects implementation is buggy * Mitigation for git version bug fixes #36134 This commit works around the issue in #36134, by using GitVersion.satisfies instead of GitVersion.intersects There are still underlying issues when trying to infer the "reference version" when no explicit one is given, but: 1. They are not reproducible with our synthetic repo 2. They occur only when the `git.<xxx>` form of Git version is used Here we just work around the user facing issue and ensure the tests are correct with our synthetic repository.
2023-03-17vtk-m: update to latest release (#35590)Vicente Bolea1-3/+3
* vtk-m: add v2.0.0 * Update var/spack/repos/builtin/packages/vtk-m/package.py --------- Co-authored-by: Kenneth Moreland <morelandkd@ornl.gov>
2023-03-17nccmp: add more constrain to dependencies, add configure args (#35539)Cameron Book1-1/+25
2023-03-17build(deps): bump actions/checkout from 3.3.0 to 3.4.0 (#36140)dependabot[bot]7-25/+25
Bumps [actions/checkout](https://github.com/actions/checkout) from 3.3.0 to 3.4.0. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/ac593985615ec2ede58e132d2e21d2b1cbd6127c...24cb9080177205b6e8c946b17badbe402adc938f) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-03-17hipcub and rocprim: enable testing (#35660)afzpatel2-3/+5
2023-03-17openssh: 9.2, 9.3 (#36162)Harmen Stoppels1-0/+2
2023-03-17nano: add v7.2 (#36148)Alec Scott1-0/+2
2023-03-17Update the PyTorch ecosystem (#36132)Adam J. Stewart11-43/+174
* py-pytorch-lightning: add v2.0.0 * py-lightning-utilities: add v0.8.0 * Update all PyTorch packages * Open-CE does not yet have patches for PyTorch 2 on ppc64le
2023-03-17Fix `--test` behavior for gromacs package. (#35674)M. Eric Irrgang1-3/+47
For `spack install --test=all gromacs` * remove the `test` target from the `check()` call and just use the `check` target, in accordance with usual GROMACS test protocol * build the test binaries explicitly during the build phase Additional minor updates are necessary. This change updates the package structure to the newer format with a separate Builder class so we can override `check()`. However, note that additional modernization should be undertaken with care.
2023-03-17ASP-based solver: tweak heuristic, modify compiler encoding (#35989)Massimiliano Culpo2-158/+187
This PR does 2 unrelated things: 1. It changes the encoding of the compilers 2. It tweaks the heuristic for the solves in a0d88179074f81d13a3fad629a43d86334e7f982 Both were initially motivated by trying to get a performance gain but, while 2 showed significant speed-ups[^1], 1 instead didn't. I kept it anyhow, since I think the code related to compilers is more consolidated with the new encoding and we might get some performance improvement out of it if we can base our errors on the `node_compiler(Package, CompilerID)` atoms instead of `attrs`. [^1]: In general the changes in the heuristic brought a ~10% speed-up on the tests I did. I'll post detailed results below. Add a warning about compilers.yaml that is triggered if there are multiple compilers with the same spec, os and target (since they can't be selected by users with the spec syntax only).
2023-03-17libx11: add v1.8.4 (#36075)Alec Scott1-0/+1
2023-03-17lmod: add 8.7.20 (#36177)Michael Kuhn1-0/+1
2023-03-16libpng package: build with CMake (#35105)John W. Parent1-16/+10
2023-03-16Fix for ESMF post_install on macOS (#36087)Matthew Thompson1-6/+10
2023-03-16Add explicit configure args to fix instrumentation-time paths (#36089)Bill Williams3-1/+6
2023-03-16[pmix] master branch uses git submodule config/oac (#36104)Stephen Sachs1-1/+2
* [pmix] master branch uses git submodule config/oac * Add comment for future versions
2023-03-16pmix, openmpi, and prrte need to use the same `configure` to find the same ↵Stephen Sachs2-0/+2
deps (#36105) * [openmpi] 5.0.0.rc10 onwards needs munge This is the error you will see when munge is missing from `PKG_CONFIG_PATH`: ``` configure:63942: checking for pmix pkg-config cflags configure:63956: check_package_pkgconfig_run_results=Package munge was not found in the pkg-config search path. Perhaps you should add the directory containing `munge.pc' to the PKG_CONFIG_PATH environment variable Package 'munge', required by 'pmix', not found configure:63959: $? = 1 configure:63966: pkg-config output: Package munge was not found in the pkg-config search path. Perhaps you should add the directory containing `munge.pc' to the PKG_CONFIG_PATH environment variable Package 'munge', required by 'pmix', not found configure:63972: result: error configure:63974: error: An error occurred retrieving pmix cppflags from pkg-config ``` * Use same PKG_CONFIG_PATH defaults for ompi+pmix+prrte The issue I tried to fix in https://github.com/spack/spack/pull/36105 comes from different default search paths in different `pkg-config` executables used in `openmpi` and `pmix` package. As these tools (`openmpi`, `pmix`, and `prrte`) all use the same mechanisms to detect dependencies, the `pkg-config` environment they use should also be equal.
2023-03-16libaio: Add version 0.3.113 (#36101)Rémi Lacroix1-0/+1
2023-03-16autodiff: new version 1.0.0 (#36121)Wouter Deconinck1-0/+1
No more https://0ver.org. No changes to build system since 0.6.12.
2023-03-16Ospray (#36128)Erik Heeren1-2/+5
* ospray: denoiser and GLM variants * ospray: denoiser defaults to True to preserve previous behaviour
2023-03-16openssl: New version 3.1.0 (#36166)Erik Schnetter1-0/+1
2023-03-16LAMMPS: add new versions (#35592)Richard Berger1-0/+9
* LAMMPS: add new stable version 20220623.3 * LAMMPS: add new patch version 20230208
2023-03-16meson: add 1.0.1 (#35987)Michael Kuhn1-0/+3
2023-03-16Modify info print of ESMF_CPP due to permission denied errors in spack on ↵Dom Heinzeller2-0/+15
MSU Hercules (#35969) * Skip info print of ESMF_CPP due to permission denied errors in spack on MSU Hercules * Better version of patch
2023-03-16reduce spec.json.sig file size (#36157)Harmen Stoppels1-1/+5
Since GPG clear-sign cannot deal with lines longer than 19995 characters and doesn't even error but simply truncates those linese (don't ask me why...), we have to be careful not to hit that line limit when reducing the filesize. So, instead this PR sets the indent level to 0 and drops the whitespace after `: `, which still reduces file size by 50% or so.
2023-03-16Windows: target arch based on spec target arch (#35797)John W. Parent3-5/+3
Update packages to check Spec's target rather than the host platform.
2023-03-16Include rocm-openmp-extras header and omp library (#36142)renjithravindrankannath1-9/+21
2023-03-16add rdkit for gninavis and remove mpi (#36117)Rocco Meli1-2/+4
2023-03-16slepc: add HPDDM wrappers (#36118)Pierre Jolivet2-1/+9
2023-03-16Revert "minify spec.json in buildcache (#36138)" (#36156)Harmen Stoppels1-1/+1
This reverts commit 1a8eefe09b034f8dda564e60b5b1905f53958aa2.
2023-03-16openfst: add v1.8.2 (#36143)Alec Scott1-0/+1
2023-03-16openal-soft: add v1.23.0 (#36144)Alec Scott1-0/+1
2023-03-16octave: add v8.1.0 (#36145)Alec Scott1-0/+1
2023-03-16nginx: add v1.23.3 (#36146)Alec Scott1-0/+1
2023-03-16netdata: add v1.38.1 (#36147)Alec Scott1-0/+1
2023-03-16mpdecimal: add v2.5.1 (#36149)Alec Scott1-0/+1
2023-03-16mpc: add v1.3.1 (#36150)Alec Scott1-0/+1
2023-03-16mosh: add v1.4.0 (#36151)Alec Scott1-0/+1
2023-03-16mkfontscale: add v1.2.2 (#36152)Alec Scott1-0/+1
2023-03-16erlang: add v25.3 (#36153)Alec Scott1-0/+1
2023-03-15qt-base: add qmake attribute (#36114)Adam J. Stewart2-1/+4
2023-03-15Hotfix: CI: Add CI target for gpu-test stack (#36136)kwryankrattiger1-0/+1
2023-03-15UCX: make version support level more realistic (#36127)Howard Pritchard1-2/+4
Per feedback from the UCX community, we rarely do update releases to anything but the current and one previous main release stream. Update comments in the UCX spack file to reflect this. Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-03-15minify spec.json in buildcache (#36138)Harmen Stoppels1-1/+1
saves about 50% of data, which is significant for hundreds of thousands of spec.json files in our buildcaches.
2023-03-15extrae: add v4.0.3 (#36059)Alec Scott1-0/+1
2023-03-15libpipeline: add v1.5.7 (#36068)Alec Scott1-0/+1
2023-03-15wrf: fix patches for aarch64 config (#35984)Annop Wongwathanarat5-28/+236
2023-03-15py-numpy: enable linking with armpl-gcc and acfl for BLAS and LAPACK (#35417)Annop Wongwathanarat1-5/+11
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>