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2018-12-04Expand dependency on qt to allow qt4 (#9964)Neil Flood1-1/+1
2018-12-04petsc: when petsc is built with fortran [default in spack] its best to use ↵Satish Balay1-1/+1
hdf5+fortran (#9986)
2018-12-04r-optparse: new package (#9967)Neil Flood2-0/+22
2018-12-04pgi: Add checksum for PGI 18.10 (#9985)Nick Forrington1-0/+1
2018-12-04cmake: add version 3.13.1 (#9983)Matthias Diener1-0/+1
2018-12-04abyss: new version (#9981)Levi Baber1-0/+1
2018-12-04Added missing libtool dependencies to libvterm and unibilium (#10007)sknigh2-0/+4
2018-12-03Download CMake sources from the Github releases (#10003)Robert Maynard1-8/+1
Now that CMake is providing CMake release artifacts on github, we should prefer those as they have better download speeds and uptime.
2018-12-03Phist 1.7.4 (#9996)jthies1-0/+13
* packages/phist: new version 1.7.4 with new variant 'host' to enable/disable host-specific optimizations.
2018-11-30Bump vtkm to version 1.3 and add new features (#9968)HAOCHENG LIU1-27/+83
This commit allows users to enable openmp, rendering, logging and mpi in vtkm. Meanwhile, it adds support for cuda architecture selection. [VTK-m 1.3 Release notes](https://gitlab.kitware.com/vtk/vtk-m/tags/v1.3.0)
2018-11-30hpctoolkit: overhaul to use spack dependencies (#9946)Mark W. Krentel2-48/+67
Overhaul hpctoolkit to AutotoolsPackage and to build its dependencies directly from spack instead of using hpctoolkit-externals. Remove hpctoolkit-externals since it's no longer needed.
2018-11-28New versions for a few python modules (#9969)jwallior7-4/+11
* py-jupyter-console: Add version 5.2.0 * py-jupyter-core: add version 4.4.0 * py-lxml: add version 4.2.5 * py-zmq: add version 17.1.2 * py-terminado: add version 0.8.1 * py-pexpect: add version 4.6.0 * py-pytables: add version 3.4.4
2018-11-28Add PLASMA version 18.11.0 and Lua variant (#9689)Piotr Luszczek1-1/+19
* Add PLASMA 18.11.1 with optional Lua and test for headers
2018-11-28Add f18 package (#9183)Ondřej Čertík1-0/+23
* Add f18 package * Fix flake8 errors * Install the f18 binary into prefix.bin by hand * Add spack-build into the path * Fix the license header
2018-11-28Injected flags have a consistent order (#9960)Massimiliano Culpo4-16/+30
Fixes #9908 Spack was assembling flags in a manner that could in different orderings for repeated concretizations of the same spec and config
2018-11-28glib: disable SELinux explicitly (#9956)Michael Kuhn1-0/+2
2018-11-27bcl2fastq2 package: recursively delete after copy (#9959)George Hartzell1-2/+2
Fixes #9944 73c978d replaced a move with a copy, which cased rmdir to fail (as it expects an empty directory). This switches to use `shutil.rmtree` instead.
2018-11-27Expose option to save all dependencies when writing spec.yaml (#9965)Scott Wittenburg1-2/+2
2018-11-27Fixing problems with lammps dependencies voropp and latte (#9909)Jon Rood3-2/+13
* Fixing problems with lammps dependencies voropp and latte. * Always replacing CFLAGS in voropp and specifying voropp+pic dependency in lammps.
2018-11-27git: add version 2.19.2 (#9961)Matthias Diener1-1/+6
Also fixes instructions for new releases
2018-11-27Rename py-proj to py-pyproj, consistent with Spack's current naming ↵Neil Flood3-4/+4
conventions (#9962)
2018-11-27new package: add support for the tfel package (#9930)thelfer1-0/+96
2018-11-26py-pygobject: add missing pkgconfig dependency (#9955)Michael Kuhn1-1/+2
2018-11-26OpenMPI: Prefer Last 3.X (#9945)Axel Huebl1-1/+1
The latest OpenMPI release, v4.0.0, does not build with many GCC variants. Since this is our default, a lot of users get hit. Let's wait for some point releases.
2018-11-26GATK: Add version 4.0.11.0 (#9953)Eric1-0/+1
2018-11-26minced: Add version 0.1.6 (#9951)Eric1-0/+1
2018-11-26hdf5: add version 1.8.21 (#9952)Matthias Diener1-0/+2
2018-11-26go: add 1.11.2 (#9948)Michael Kuhn1-0/+1
2018-11-26metabat: Add version 2.11.2 (#9950)Eric1-0/+1
2018-11-26Feature/gatk (#9872)Miles Perry1-6/+4
* added 3.8-1 version * fixed flake8 stuff
2018-11-26Uncomment dependencies previously disallowed by concretizer (#9942)Adam J. Stewart14-63/+22
2018-11-24Package/py scikit learn (#9843)Sinan1-3/+8
* add v0.20 specific dependency versions, also add cython and py-test as dependencies * make flake8 happy * make cython a build-only dependency
2018-11-24py-pygresql: new package (#9922)Neil Flood1-0/+19
* py-pygresql: new package * Added dependency on py-setuptools, as the build will use it if present
2018-11-24py-psycopg2: new package (#9926)Neil Flood1-0/+18
* py-psycopg2: new package * Added dependency on py-setuptools, as the build will use it if present
2018-11-24p4est: fix a typo (#9932)Denis Davydov1-1/+1
2018-11-24mc: add version 4.8.21 (#9943)Matthias Diener1-0/+1
2018-11-24intel-parallel-studio: add missing updates to 2019.1 (#9941)Matthias Diener2-0/+3
2018-11-24py-geopandas: New package. (#9919)Neil Flood5-0/+116
* py-geopandas: New package, including packages for its dependencies * Trailing whitespace removed, etc * One more trailing whitespace * Removed some extraneous dependencies. No idea why I thought I needed them, but it now builds fine without them. * Added a variant +plotting, to include the dependencies required for plotting, as these are large-ish if not being used. * Added explicit dependency on py-matplotlib
2018-11-24cmake: add version 3.13.0 (#9940)Matthias Diener1-0/+1
2018-11-24r-geor: new package, and a couple of its dependencies (#9920)Neil Flood4-0/+85
* r-geor: new package, and a couple of its dependencies * Update to new copyright header * Include the list_url for the R package archive dir * Added explicit version ranges on dependencies, as per the relevant CRAN pages * Correct dependency types in r-splancs.
2018-11-23new version 18.1 for py-pip (#9938)Andreas Baumbach1-0/+1
Change-Id: Ie462e802049dd6150767dc555fb5708999e081ec
2018-11-23r-compositions: new package, including its dependencies (#9921)Neil Flood3-0/+61
* r-compositions: new package, including its dependencies * Include the list_url for the R package archive dir * Added explicit version ranges on dependencies, as per the relevant CRAN pages
2018-11-22libspatialite: new package (#9923)Neil Flood2-0/+37
2018-11-22munge: update versions and url format to reflect switch to .xz format… (#9916)Nicholas Labello1-2/+3
* munge: update versions and url format to reflect switch to .xz format in recent releases * package:munge remove unneeded version-specific urls
2018-11-22minced: add version 0.3.2 and fix install paths (#9918)Eric1-2/+4
2018-11-22qca: new package (#9924)Neil Flood1-0/+25
2018-11-22qjson: new package (#9925)Neil Flood1-0/+18
2018-11-22p4est: apply patches to 2.0 only (#9928)Denis Davydov1-2/+4
2018-11-22multitime: new package (#9929)Michael Kuhn1-0/+18
2018-11-22flecsale: add missing dependencies and fix flecsi runtime model (#9774)Michael Kuhn1-1/+6