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2021-04-27Don't report configure errors to CDash for successful packages (#23286)Zack Galbreath3-9/+61
Convert configure errors detected by our log scraper into warnings when the package being installed reports that it was successful.
2021-04-27prmon: add version 2.2.0 (#23207)Valentin Volkl1-3/+4
Switched to .zip source archives to avoid problems with spack checksum finding binary assets when excluding versions.
2021-04-27Add +plugins to binutils dependency (#23272)wspear1-1/+1
Tau will build but instrumented applications will fail to link with tau if it is built with a binutils that does not include the plugins variant.
2021-04-27kvtree 1.1.1: updated checksum (#23262)eugeneswalker1-4/+4
2021-04-27Add new package: py-aiodns (#22138)darmac1-0/+22
2021-04-27Dyninst: add elfutils versioning (#19648)Tim Haines2-2/+5
2021-04-26GLM: Add version 0.9.9.8. (#22467)Rémi Lacroix1-1/+20
The CMake install target was removed in version 0.9.9.6 so update the package accordingly.
2021-04-26New package: r-assertive-models (#23266)Jen Herting1-0/+25
2021-04-26New package: r-assertive-reflection (#23267)Jen Herting1-0/+26
2021-04-26Dyninst: Add dependencies for v11.0.0 (#23121)Tim Haines3-2/+7
Also update the mpileaks unit test to avoid a conflict on CentOS 6 where Dyninst >=11.0.0 no longer builds due to a compiler version conflict.
2021-04-26add a package libcxxwrap-julia (#23076)Drew Whitehouse1-0/+23
2021-04-26hypre: Add a variant for unified memory support (#23258)QuellynSnead1-0/+5
Enabling unified memory requires cuda to be enabled as well.
2021-04-26ci: Remove leftover duplicate gitlab yaml (#23248)Chuck Atkins1-125/+0
2021-04-26py-scipy: add v1.6.3 (#23253)Adam J. Stewart1-0/+1
2021-04-26ci: Generalize the GitLab CI pipeline yaml (#23225)Chuck Atkins3-34/+224
* ci: Generalize the GitLab CI pipeline yaml * ci: Rename cloud_e4s_pipelines to the more general cloud_pipelines
2021-04-26r-blavaan: new package (#23232)Glenn Johnson1-0/+37
2021-04-26fasd: new package (#23238)miheer vaidya1-0/+21
2021-04-26r-brms: new package (#23233)Glenn Johnson1-0/+52
2021-04-26p4est: add v2.3.1 (#23235)kurtsansom1-0/+2
2021-04-26openmpi: add v4.1.1 (#23242)Robert Mijakovic1-1/+2
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-04-26py-hepunits: add v2.1.0 (#23244)Valentin Volkl1-0/+1
2021-04-26py-awkward: add v1.2.2, py-uproot: add v4.0.7 (#23245)Valentin Volkl2-0/+2
2021-04-25clingo: add v5.5.0, v5.4.1 (#23239)Massimiliano Culpo1-1/+10
fixes #23236 Version 5.5.0 depends on Python 3.6 or later and CFFI
2021-04-25FLEXI: Updates cmake options according to recent changes (#23042)Julius Plehn1-3/+55
* fixes cmake options * adds several optional tools * use tag & consistent names
2021-04-23argobots: changed 'no' into 'none' for variant (#23171)Matthieu Dorier1-3/+3
2021-04-23New package: r-champ (#23221)Glenn Johnson1-0/+60
2021-04-23gcc package: fix build with +nvptx (#23165)Andrew W Elble2-2/+16
backport of 383400a6078d upstream to allow for cuda@11:
2021-04-23New package: r-nonnest2 (#23222)Glenn Johnson1-0/+27
2021-04-23New package: r-shinystan (#23223)Glenn Johnson1-0/+42
2021-04-23r-renv: new package (#23067)Glenn Johnson1-0/+21
2021-04-23Bootstrap with -O3 in cmake (#23147)Harmen Stoppels1-0/+2
2021-04-23Add NCCL 2.8.4 and 2.9.6. (#23219)romerojosh1-0/+2
2021-04-23Add cuDNN 8.2.0 (#23214)romerojosh1-0/+8
2021-04-23MUMPS: allow for more optimized builds (#23161)Rémi Lacroix1-0/+24
* MUMPS: Use GEMMT BLAS extension when possible. This should improve the performance and is recommanded by the developers. * MUMPS: Add a new "openmp" variant. * MUMPS: Add a "blr_mt" variant. This improves performance when using OpenMP but might not be compatible with all multithreaded BLAS.
2021-04-23tasmanian: add v7.5, improved cuda and rocm support (#23148)Miroslav Stoyanov1-2/+25
2021-04-23ROOT: fix pyroot build failure in v6.20.0 (#23038)David Hadley1-1/+1
2021-04-23openmm: add v7.5.0 (#23037)Andrew W Elble1-0/+1
2021-04-23r-rjava: set JAVAH environment variable (#23055)Glenn Johnson1-0/+5
Set the path to javah via the JAVAH environment variable. If it is a version of java that does not have javah it will fall back to `javac -h`. Without specifying this the build could pick up a javah from the system.
2021-04-23r-runjags: new package (#23058)Glenn Johnson1-0/+31
2021-04-23r-lavaan: new package (#23138)Glenn Johnson1-0/+24
2021-04-23r-colourpicker: new package (#23136)Glenn Johnson1-0/+31
2021-04-23r-isva: new package (#23137)Glenn Johnson1-0/+22
2021-04-23r-dmrcate: new package (#23151)Glenn Johnson1-0/+36
2021-04-23mpa and fgfs: add v1.1.1 (#23173)Gregory Lee2-0/+2
2021-04-23gmap-gsnap: add v2021-03-08 (#23178)snehring1-0/+1
2021-04-23augustus: add v3.4.0 and update package (#22879)Glenn Johnson2-38/+112
- add version 3.4.0 - add patch for bam2wig when version 3.4.0 - url format changed again, hopefully stable now - added missing python dependency when version >3.3.1 - have older version compile with htslib, samtools ,bcftools - new dependencies for version 3.4.0 - sqlite - mysql-client - mysqlpp - lp-solve - suite-sparse - refactored filtering code - set python interpreter in scripts
2021-04-23shadow: add v4.8.1 (#23185)Robert Mijakovic1-2/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-04-23fontconfig: resolve tarball issue fcobjshash.h (#23190)Tamara Dahlgren1-0/+6
2021-04-23docs: be more precise on what `spack add ...` does (#23204)George Hartzell1-3/+3
This is as much a question as it is a minor fine-tuning of the docs. I've been known to add things to an environment by editing the `spack.yaml` file directly. When I read the previous version of this sentence, I was afraid that `spack add` was actually doing *two* things, modifying the `spack.yaml` and updating something else that defined the roots of the Environment. A bit of experimentation suggests that editing the `spack.yaml` file is sufficient to change the roots. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-04-23mpich: post-configure patch for cce (#23193)Greg Becker1-0/+11